Variant report

Variant	rs73576998
Chromosome Location	chr6:146391015-146391016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs57889864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60430705	0.91[AFR][1000 genomes]
rs73576928	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578807	0.91[AFR][1000 genomes]
rs73578811	0.91[AFR][1000 genomes]
rs73578812	0.91[AFR][1000 genomes]
rs73578814	0.91[AFR][1000 genomes]
rs73578823	0.91[AFR][1000 genomes]
rs73578827	0.91[AFR][1000 genomes]
rs73578832	0.91[AFR][1000 genomes]
rs73578833	0.82[AFR][1000 genomes]
rs73582189	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584226	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7739858	1.00[AMR][1000 genomes]
rs7757974	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1029440	chr6:146349442-146407453	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146388200-146399800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:146390400-146391600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links