Variant report

Variant	rs73559143
Chromosome Location	chr6:145749288-145749289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1396645	1.00[EUR][1000 genomes]
rs4566900	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59400283	1.00[EUR][1000 genomes]
rs59536308	1.00[EUR][1000 genomes]
rs59839423	1.00[EUR][1000 genomes]
rs6899864	1.00[EUR][1000 genomes]
rs6929731	1.00[EUR][1000 genomes]
rs73559156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73560914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73562162	1.00[EUR][1000 genomes]
rs73568386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73568401	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7742823	1.00[EUR][1000 genomes]
rs7748474	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017166	chr6:145677071-145808448	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv604838	chr6:145709371-145841146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145740800-145749600	Weak transcription	Fetal Brain Male	brain
2	chr6:145748000-145750200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:145748200-145750000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:145748200-145750200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:145748400-145749800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:145748800-145749600	Enhancers	Brain Germinal Matrix	brain
7	chr6:145749000-145749400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:145749000-145749400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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