Variant report

Variant	rs7742823
Chromosome Location	chr6:145602977-145602978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1396645	1.00[EUR][1000 genomes]
rs28729387	0.81[AMR][1000 genomes]
rs4566900	1.00[EUR][1000 genomes]
rs59400283	1.00[EUR][1000 genomes]
rs59536308	1.00[EUR][1000 genomes]
rs59839423	1.00[EUR][1000 genomes]
rs6899864	1.00[EUR][1000 genomes]
rs6929731	1.00[EUR][1000 genomes]
rs73559143	1.00[EUR][1000 genomes]
rs73559156	1.00[EUR][1000 genomes]
rs73560914	1.00[EUR][1000 genomes]
rs73562162	1.00[EUR][1000 genomes]
rs73575448	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv524076	chr6:145600618-145609950	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145598400-145603600	Weak transcription	Stomach Mucosa	stomach
2	chr6:145599800-145607400	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links