Variant report
| Variant | rs28729387 |
|---|---|
| Chromosome Location | chr6:145561024-145561025 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs12174179 | 0.81[ASN][1000 genomes] |
| rs28588068 | 0.80[ASN][1000 genomes] |
| rs473007 | 0.84[ASN][1000 genomes] |
| rs474575 | 0.84[ASN][1000 genomes] |
| rs475571 | 0.84[ASN][1000 genomes] |
| rs492850 | 0.84[ASN][1000 genomes] |
| rs4990866 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs504480 | 0.84[ASN][1000 genomes] |
| rs506289 | 0.84[ASN][1000 genomes] |
| rs522841 | 0.84[ASN][1000 genomes] |
| rs530073 | 0.84[ASN][1000 genomes] |
| rs539869 | 0.84[ASN][1000 genomes] |
| rs543831 | 0.84[ASN][1000 genomes] |
| rs559536 | 0.84[ASN][1000 genomes] |
| rs59481112 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6937810 | 1.00[EUR][1000 genomes] |
| rs73562134 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7742823 | 0.81[AMR][1000 genomes] |
| rs9373446 | 0.94[ASN][1000 genomes] |
| rs9373447 | 0.93[ASN][1000 genomes] |
| rs9376902 | 0.81[ASN][1000 genomes] |
| rs9376904 | 1.00[ASN][1000 genomes] |
| rs9376905 | 0.93[ASN][1000 genomes] |
| rs9376906 | 0.93[ASN][1000 genomes] |
| rs9376910 | 0.80[ASN][1000 genomes] |
| rs9376912 | 0.80[ASN][1000 genomes] |
| rs9390291 | 0.81[ASN][1000 genomes] |
| rs9390292 | 1.00[ASN][1000 genomes] |
| rs9399537 | 0.81[ASN][1000 genomes] |
| rs9399538 | 0.97[ASN][1000 genomes] |
| rs9399540 | 0.90[ASN][1000 genomes] |
| rs9403668 | 0.81[ASN][1000 genomes] |
| rs9403674 | 0.81[ASN][1000 genomes] |
| rs9403675 | 0.93[ASN][1000 genomes] |
| rs9403677 | 0.90[ASN][1000 genomes] |
| rs9403679 | 0.80[ASN][1000 genomes] |
| rs9484960 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9497220 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016747 | chr6:144917411-145599874 | Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1022965 | chr6:145374851-145635385 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:145560400-145565800 | Weak transcription | Fetal Brain Male | brain |
