Variant report

Variant	rs9399538
Chromosome Location	chr6:145557029-145557030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12174179	0.83[ASN][1000 genomes]
rs28729387	0.97[ASN][1000 genomes]
rs473007	0.81[ASN][1000 genomes]
rs474575	0.81[ASN][1000 genomes]
rs475571	0.81[ASN][1000 genomes]
rs492850	0.81[ASN][1000 genomes]
rs504480	0.81[ASN][1000 genomes]
rs506289	0.81[ASN][1000 genomes]
rs522841	0.81[ASN][1000 genomes]
rs530073	0.81[ASN][1000 genomes]
rs539869	0.81[ASN][1000 genomes]
rs543831	0.81[ASN][1000 genomes]
rs559536	0.81[ASN][1000 genomes]
rs9373446	0.90[ASN][1000 genomes]
rs9373447	0.90[ASN][1000 genomes]
rs9376902	0.83[ASN][1000 genomes]
rs9376904	0.97[ASN][1000 genomes]
rs9376905	0.90[ASN][1000 genomes]
rs9376906	0.90[ASN][1000 genomes]
rs9390291	0.83[ASN][1000 genomes]
rs9390292	0.97[ASN][1000 genomes]
rs9399537	0.83[ASN][1000 genomes]
rs9399540	0.87[ASN][1000 genomes]
rs9403668	0.83[ASN][1000 genomes]
rs9403670	0.81[ASN][1000 genomes]
rs9403674	0.83[ASN][1000 genomes]
rs9403675	0.90[ASN][1000 genomes]
rs9403677	0.86[ASN][1000 genomes]
rs9497220	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145553600-145557600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:145556600-145558800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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