Variant report

Variant	rs543831
Chromosome Location	chr6:145587688-145587689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145586529..145589505-chr6:145589669..145591827,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1415808	0.87[ASN][1000 genomes]
rs28588068	0.84[ASN][1000 genomes]
rs28729387	0.84[ASN][1000 genomes]
rs473007	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs474575	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475571	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs492850	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs504480	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs506289	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs522841	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs530073	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs539869	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559536	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373447	0.90[ASN][1000 genomes]
rs9376904	0.84[ASN][1000 genomes]
rs9376905	0.90[ASN][1000 genomes]
rs9376906	0.90[ASN][1000 genomes]
rs9376910	0.84[ASN][1000 genomes]
rs9376912	0.84[ASN][1000 genomes]
rs9390292	0.84[ASN][1000 genomes]
rs9399538	0.81[ASN][1000 genomes]
rs9399540	0.93[ASN][1000 genomes]
rs9403675	0.90[ASN][1000 genomes]
rs9403677	0.93[ASN][1000 genomes]
rs9403678	0.87[ASN][1000 genomes]
rs9403679	0.84[ASN][1000 genomes]
rs9497220	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145579400-145593600	Weak transcription	Fetal Kidney	kidney
2	chr6:145584200-145593200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:145586000-145588000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:145586200-145588000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:145586800-145587800	Enhancers	Fetal Intestine Large	intestine
6	chr6:145586800-145588800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:145587000-145589000	Enhancers	Fetal Intestine Small	intestine
8	chr6:145587200-145588200	Flanking Active TSS	HepG2	liver
9	chr6:145587200-145588400	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr6:145587200-145588600	Enhancers	Liver	Liver
11	chr6:145587400-145587800	Enhancers	Fetal Brain Male	brain
12	chr6:145587600-145588600	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr6:145587600-145589200	Enhancers	Stomach Mucosa	stomach
14	chr6:145587600-145589800	Enhancers	Adipose Nuclei	Adipose

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