Variant report

Variant	rs9376905
Chromosome Location	chr6:145568245-145568246
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs28588068	0.87[ASN][1000 genomes]
rs28729387	0.93[ASN][1000 genomes]
rs473007	0.90[ASN][1000 genomes]
rs474575	0.90[ASN][1000 genomes]
rs475571	0.90[ASN][1000 genomes]
rs492850	0.90[ASN][1000 genomes]
rs504480	0.90[ASN][1000 genomes]
rs506289	0.90[ASN][1000 genomes]
rs522841	0.90[ASN][1000 genomes]
rs530073	0.90[ASN][1000 genomes]
rs539869	0.90[ASN][1000 genomes]
rs543831	0.90[ASN][1000 genomes]
rs559536	0.90[ASN][1000 genomes]
rs9373446	0.87[ASN][1000 genomes]
rs9373447	1.00[ASN][1000 genomes]
rs9376904	0.93[ASN][1000 genomes]
rs9376906	1.00[ASN][1000 genomes]
rs9376910	0.87[ASN][1000 genomes]
rs9376912	0.87[ASN][1000 genomes]
rs9390292	0.93[ASN][1000 genomes]
rs9390293	0.80[ASN][1000 genomes]
rs9390294	0.80[ASN][1000 genomes]
rs9399538	0.90[ASN][1000 genomes]
rs9399540	0.97[ASN][1000 genomes]
rs9403675	1.00[ASN][1000 genomes]
rs9403677	0.97[ASN][1000 genomes]
rs9403678	0.83[ASN][1000 genomes]
rs9403679	0.87[ASN][1000 genomes]
rs9403681	0.80[ASN][1000 genomes]
rs9403682	0.80[ASN][1000 genomes]
rs9497220	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145562800-145568600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:145563000-145568600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:145563000-145568600	Weak transcription	Osteobl	bone
4	chr6:145563200-145568600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:145566800-145568600	Weak transcription	A549	lung
6	chr6:145566800-145568600	Weak transcription	NH-A	brain
7	chr6:145566800-145568600	Weak transcription	NHDF-Ad	bronchial
8	chr6:145566800-145569000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:145567000-145568600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:145567000-145568600	Weak transcription	HepG2	liver
11	chr6:145567000-145570200	Weak transcription	Liver	Liver
12	chr6:145567400-145568400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:145568000-145568400	Enhancers	NHLF	lung
14	chr6:145568000-145569000	Enhancers	Hela-S3	cervix
15	chr6:145568000-145569200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:145568200-145568600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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