Variant report

Variant	rs9390294
Chromosome Location	chr6:145598511-145598512
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11155411	0.82[ASN][1000 genomes]
rs1415808	0.84[ASN][1000 genomes]
rs28588068	0.93[ASN][1000 genomes]
rs9373447	0.80[ASN][1000 genomes]
rs9373451	0.82[ASN][1000 genomes]
rs9373452	0.82[ASN][1000 genomes]
rs9376905	0.80[ASN][1000 genomes]
rs9376906	0.80[ASN][1000 genomes]
rs9376910	0.93[ASN][1000 genomes]
rs9376912	0.93[ASN][1000 genomes]
rs9376915	0.82[ASN][1000 genomes]
rs9390293	1.00[ASN][1000 genomes]
rs9399541	0.96[ASN][1000 genomes]
rs9403675	0.80[ASN][1000 genomes]
rs9403677	0.83[ASN][1000 genomes]
rs9403678	0.90[ASN][1000 genomes]
rs9403679	0.93[ASN][1000 genomes]
rs9403681	1.00[ASN][1000 genomes]
rs9403682	1.00[ASN][1000 genomes]
rs9497220	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145593000-145599000	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:145595600-145600200	Enhancers	HepG2	liver
3	chr6:145597600-145598800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:145597800-145598800	Weak transcription	Left Ventricle	heart
5	chr6:145598000-145599200	Weak transcription	NHDF-Ad	bronchial
6	chr6:145598200-145598600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:145598400-145603600	Weak transcription	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links