Variant report

Variant	rs9376906
Chromosome Location	chr6:145568751-145568752
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs28588068	0.87[ASN][1000 genomes]
rs28729387	0.93[ASN][1000 genomes]
rs473007	0.90[ASN][1000 genomes]
rs474575	0.90[ASN][1000 genomes]
rs475571	0.90[ASN][1000 genomes]
rs492850	0.90[ASN][1000 genomes]
rs504480	0.90[ASN][1000 genomes]
rs506289	0.90[ASN][1000 genomes]
rs522841	0.90[ASN][1000 genomes]
rs530073	0.90[ASN][1000 genomes]
rs539869	0.90[ASN][1000 genomes]
rs543831	0.90[ASN][1000 genomes]
rs559536	0.90[ASN][1000 genomes]
rs9373446	0.87[ASN][1000 genomes]
rs9373447	1.00[ASN][1000 genomes]
rs9376904	0.93[ASN][1000 genomes]
rs9376905	1.00[ASN][1000 genomes]
rs9376910	0.87[ASN][1000 genomes]
rs9376912	0.87[ASN][1000 genomes]
rs9390292	0.93[ASN][1000 genomes]
rs9390293	0.80[ASN][1000 genomes]
rs9390294	0.80[ASN][1000 genomes]
rs9399538	0.90[ASN][1000 genomes]
rs9399540	0.97[ASN][1000 genomes]
rs9403675	1.00[ASN][1000 genomes]
rs9403677	0.97[ASN][1000 genomes]
rs9403678	0.83[ASN][1000 genomes]
rs9403679	0.87[ASN][1000 genomes]
rs9403681	0.80[ASN][1000 genomes]
rs9403682	0.80[ASN][1000 genomes]
rs9497220	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145566800-145569000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:145567000-145570200	Weak transcription	Liver	Liver
3	chr6:145568000-145569000	Enhancers	Hela-S3	cervix
4	chr6:145568000-145569200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:145568400-145569600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:145568600-145568800	Enhancers	Osteobl	bone
7	chr6:145568600-145569000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:145568600-145569000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:145568600-145569000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:145568600-145569000	Enhancers	HMEC	breast
11	chr6:145568600-145569000	Enhancers	NH-A	brain
12	chr6:145568600-145569000	Enhancers	NHLF	lung
13	chr6:145568600-145569200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:145568600-145569200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:145568600-145569200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:145568600-145569200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:145568600-145569400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:145568600-145569400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:145568600-145569400	Enhancers	A549	lung
20	chr6:145568600-145569400	Enhancers	HepG2	liver
21	chr6:145568600-145569400	Enhancers	NHDF-Ad	bronchial
22	chr6:145568600-145569400	Enhancers	NHEK	skin
23	chr6:145568600-145569600	Enhancers	Muscle Satellite Cultured Cells	--

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