Variant report

Variant	rs9373446
Chromosome Location	chr6:145563435-145563436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13362636	1.00[AFR][1000 genomes]
rs28729387	0.94[ASN][1000 genomes]
rs6932807	1.00[AFR][1000 genomes]
rs9373447	0.87[ASN][1000 genomes]
rs9376904	0.94[ASN][1000 genomes]
rs9376905	0.87[ASN][1000 genomes]
rs9376906	0.87[ASN][1000 genomes]
rs9390292	0.94[ASN][1000 genomes]
rs9399538	0.90[ASN][1000 genomes]
rs9399540	0.84[ASN][1000 genomes]
rs9403675	0.87[ASN][1000 genomes]
rs9403677	0.84[ASN][1000 genomes]
rs9497220	0.87[ASN][1000 genomes]
rs9497222	0.83[AFR][1000 genomes]
rs9497224	0.83[AFR][1000 genomes]
rs9497228	0.83[AFR][1000 genomes]
rs9497229	1.00[AFR][1000 genomes]
rs9497232	0.83[AFR][1000 genomes]
rs9497233	1.00[AFR][1000 genomes]
rs9497234	1.00[AFR][1000 genomes]
rs9497245	1.00[AFR][1000 genomes]
rs9497252	0.83[AFR][1000 genomes]
rs9497256	0.83[AFR][1000 genomes]
rs9497257	0.83[AFR][1000 genomes]
rs9497261	1.00[AFR][1000 genomes]
rs9497262	0.83[AFR][1000 genomes]
rs9497263	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145560400-145565800	Weak transcription	Fetal Brain Male	brain
2	chr6:145561600-145566200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:145562200-145563800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:145562400-145564400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:145562800-145565400	Weak transcription	HepG2	liver
6	chr6:145562800-145566400	Weak transcription	NH-A	brain
7	chr6:145562800-145568000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:145562800-145568000	Weak transcription	Hela-S3	cervix
9	chr6:145562800-145568600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:145563000-145568600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:145563000-145568600	Weak transcription	Osteobl	bone
12	chr6:145563200-145565200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:145563200-145565800	Weak transcription	A549	lung
14	chr6:145563200-145565800	Weak transcription	NHDF-Ad	bronchial
15	chr6:145563200-145566000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:145563200-145568600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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