Variant report

Variant	rs9497233
Chromosome Location	chr6:145604267-145604268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13362636	1.00[AFR][1000 genomes]
rs6932807	1.00[AFR][1000 genomes]
rs9373446	1.00[AFR][1000 genomes]
rs9497222	0.83[AFR][1000 genomes]
rs9497224	0.83[AFR][1000 genomes]
rs9497228	0.83[AFR][1000 genomes]
rs9497229	1.00[AFR][1000 genomes]
rs9497232	0.83[AFR][1000 genomes]
rs9497234	1.00[AFR][1000 genomes]
rs9497245	1.00[AFR][1000 genomes]
rs9497252	0.83[AFR][1000 genomes]
rs9497256	0.83[AFR][1000 genomes]
rs9497257	0.83[AFR][1000 genomes]
rs9497261	1.00[AFR][1000 genomes]
rs9497262	0.83[AFR][1000 genomes]
rs9497263	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv524076	chr6:145600618-145609950	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145599800-145607400	Weak transcription	Fetal Heart	heart
2	chr6:145603600-145604400	Enhancers	Stomach Mucosa	stomach
3	chr6:145603800-145604400	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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