Variant report

Variant	rs9497228
Chromosome Location	chr6:145597417-145597418
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13362636	0.83[AFR][1000 genomes]
rs6932807	0.83[AFR][1000 genomes]
rs9373446	0.83[AFR][1000 genomes]
rs9497222	1.00[AFR][1000 genomes]
rs9497224	1.00[AFR][1000 genomes]
rs9497229	0.83[AFR][1000 genomes]
rs9497233	0.83[AFR][1000 genomes]
rs9497234	0.83[AFR][1000 genomes]
rs9497245	0.83[AFR][1000 genomes]
rs9497252	1.00[AFR][1000 genomes]
rs9497256	1.00[AFR][1000 genomes]
rs9497261	0.83[AFR][1000 genomes]
rs9497263	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145593000-145599000	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:145595600-145600200	Enhancers	HepG2	liver
3	chr6:145597200-145597600	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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