Variant report

Variant	rs73562134
Chromosome Location	chr6:145562200-145562201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17074907	0.97[AFR][1000 genomes]
rs28729387	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4990866	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56968627	0.93[AFR][1000 genomes]
rs59481112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60041948	0.98[AFR][1000 genomes]
rs6904351	0.97[AFR][1000 genomes]
rs6935017	0.96[AFR][1000 genomes]
rs6935914	0.96[AFR][1000 genomes]
rs6937810	1.00[EUR][1000 genomes]
rs9484960	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145560400-145565800	Weak transcription	Fetal Brain Male	brain
2	chr6:145561600-145566200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:145561800-145562800	Enhancers	HepG2	liver
4	chr6:145561800-145563200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:145562000-145562400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:145562000-145562400	Enhancers	A549	lung
7	chr6:145562000-145562400	Enhancers	Osteobl	bone
8	chr6:145562000-145562800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:145562000-145562800	Enhancers	NH-A	brain
10	chr6:145562000-145563000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:145562000-145563000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:145562000-145563200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:145562000-145563200	Enhancers	NHDF-Ad	bronchial
14	chr6:145562200-145562400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:145562200-145562600	Enhancers	NHLF	lung
16	chr6:145562200-145563800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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