Variant report

Variant	rs59839423
Chromosome Location	chr6:145628191-145628192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1396645	1.00[EUR][1000 genomes]
rs4566900	1.00[EUR][1000 genomes]
rs59400283	1.00[EUR][1000 genomes]
rs59536308	1.00[EUR][1000 genomes]
rs6899864	1.00[EUR][1000 genomes]
rs6929731	1.00[EUR][1000 genomes]
rs73559143	1.00[EUR][1000 genomes]
rs73559156	1.00[EUR][1000 genomes]
rs73560914	1.00[EUR][1000 genomes]
rs73562162	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575448	1.00[EUR][1000 genomes]
rs7742823	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145625000-145628400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:145625600-145628800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:145626200-145630600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:145626600-145635200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:145627000-145628400	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr6:145627800-145628600	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links