Variant report

Variant	rs17075588
Chromosome Location	chr6:146338796-146338797
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146332080..146334276-chr6:146338594..146340945,2	K562	blood:
2	chr6:146337459..146340301-chr6:146352886..146354448,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17075400	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17075404	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17075414	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17075446	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17075465	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17075499	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17075501	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17075511	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17075515	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17075527	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075530	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075544	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075546	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075548	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075552	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17075584	1.00[ASN][1000 genomes]
rs17075604	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17075636	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075661	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075663	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075666	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1854902	0.81[ASN][1000 genomes]
rs1970304	1.00[AFR][1000 genomes]
rs7739858	1.00[ASN][1000 genomes]
rs9497449	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146337600-146339000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr6:146337800-146339800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:146338400-146339400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:146338400-146339600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:146338600-146338800	Enhancers	HUES48 Cell Line	embryonic stem cell

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