Variant report

Variant	rs17075385
Chromosome Location	chr6:146126397-146126398
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65265648..65267298-chr6:146124589..146126834,2	MCF-7	breast:
2	chr6:146125227..146127390-chr6:147195010..147197775,2	K562	blood:
3	chr6:146125578..146127753-chr6:146287911..146290228,2	K562	blood:
4	chr6:146052168..146062191-chr6:146124046..146141258,59	K562	blood:
5	chr6:146109509..146111259-chr6:146124706..146127003,2	K562	blood:
6	chr6:146054833..146059237-chr6:146126389..146132897,8	MCF-7	breast:
7	chr6:146120708..146122690-chr6:146126076..146128209,2	MCF-7	breast:
8	chr6:146054602..146056555-chr6:146125014..146127931,2	MCF-7	breast:
9	chr6:146076265..146078727-chr6:146125828..146127450,2	MCF-7	breast:
10	chr6:146047378..146061811-chr6:146118130..146137627,77	K562	blood:

No data

Variant related genes	Relation type
ENSG00000251562	Chromatin interaction
ENSG00000270117	Chromatin interaction
ENSG00000270828	Chromatin interaction
ENSG00000112425	Chromatin interaction
ENSG00000270638	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17054153	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075370	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075389	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075400	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075404	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075411	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075414	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17075465	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs17075499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17075501	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17075511	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17075515	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs17075527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075544	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075546	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075552	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17724951	1.00[AFR][1000 genomes]
rs17724957	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17725045	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17725081	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17725112	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17725154	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17797949	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17798033	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17798183	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17798189	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17798207	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1970304	0.94[ASN][1000 genomes]
rs2143065	1.00[AFR][1000 genomes]
rs6570721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs73579444	0.88[ASN][1000 genomes]
rs999859	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv981375	chr6:146125997-146130212	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146104600-146127000	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:146105200-146134400	Weak transcription	Thymus	Thymus
3	chr6:146106000-146133600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:146110200-146135000	Weak transcription	Pancreas	Pancrea
5	chr6:146112400-146135000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:146113400-146133600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:146116400-146126600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:146116800-146126400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:146116800-146128600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:146117400-146130400	Strong transcription	HSMM	muscle
11	chr6:146118400-146126400	Weak transcription	Spleen	Spleen
12	chr6:146118400-146128600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:146119200-146134800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:146119400-146126400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:146119400-146127600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:146119400-146135000	Weak transcription	Small Intestine	intestine
17	chr6:146119600-146127400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:146120200-146127600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:146120200-146127600	Strong transcription	Dnd41	blood
20	chr6:146120200-146128600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:146120200-146129800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr6:146120600-146128600	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:146121200-146127600	Strong transcription	Osteobl	bone
24	chr6:146121200-146134600	Weak transcription	Colonic Mucosa	Colon
25	chr6:146121200-146134600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr6:146121400-146130400	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr6:146121400-146135000	Weak transcription	Gastric	stomach
28	chr6:146121600-146127800	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:146122200-146127400	Strong transcription	NHLF	lung
30	chr6:146122200-146127600	Strong transcription	Primary B cells from cord blood	blood
31	chr6:146122200-146127600	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr6:146122200-146127600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:146122200-146127600	Strong transcription	Duodenum Mucosa	Duodenum
34	chr6:146122200-146127600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr6:146122200-146127600	Strong transcription	HepG2	liver
36	chr6:146122200-146127800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr6:146122200-146128000	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:146122200-146128600	Strong transcription	A549	lung
39	chr6:146122200-146129200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr6:146122200-146134000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr6:146122400-146127400	Strong transcription	Adipose Nuclei	Adipose
42	chr6:146122400-146127400	Strong transcription	Fetal Muscle Leg	muscle
43	chr6:146122400-146127600	Strong transcription	Primary hematopoietic stem cells	blood
44	chr6:146122400-146127600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:146122400-146127600	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr6:146122400-146128600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:146122400-146130400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr6:146122600-146127600	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr6:146122800-146127200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:146122800-146127400	Strong transcription	HSMMtube	muscle

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