Variant report

Variant	rs17075370
Chromosome Location	chr6:146119173-146119174
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146078233..146080576-chr6:146117352..146119241,2	K562	blood:
2	chr6:146117599..146120240-chr6:146121870..146124861,2	MCF-7	breast:
3	chr6:146047378..146061811-chr6:146118130..146137627,77	K562	blood:
4	chr6:146056101..146058429-chr6:146117855..146120518,3	K562	blood:

Variant related genes	Relation type
ENSG00000270638	Chromatin interaction
ENSG00000112425	Chromatin interaction
ENSG00000270828	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17054153	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075385	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075389	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075400	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075404	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075411	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075414	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17075465	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs17075499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17075501	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17075511	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17075515	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs17075527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075544	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075546	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075552	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17724951	1.00[AFR][1000 genomes]
rs17724957	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17725045	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17725081	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17725112	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17725154	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17797949	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17798033	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17798183	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17798189	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17798207	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1970304	0.94[ASN][1000 genomes]
rs2143065	1.00[AFR][1000 genomes]
rs6570721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs73579444	0.88[ASN][1000 genomes]
rs999859	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146100600-146123200	Weak transcription	HUVEC	blood vessel
2	chr6:146103000-146119400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:146104600-146127000	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:146105000-146123200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:146105200-146134400	Weak transcription	Thymus	Thymus
6	chr6:146105400-146125800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:146105800-146125600	Weak transcription	Fetal Kidney	kidney
8	chr6:146106000-146133600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:146106600-146122200	Weak transcription	NHLF	lung
10	chr6:146106800-146121200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:146106800-146122800	Weak transcription	HSMMtube	muscle
12	chr6:146107000-146122200	Weak transcription	Left Ventricle	heart
13	chr6:146107000-146125600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:146109400-146120200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:146110200-146135000	Weak transcription	Pancreas	Pancrea
16	chr6:146111000-146120200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:146112400-146122200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:146112400-146122400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:146112400-146122400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:146112400-146122400	Weak transcription	Adipose Nuclei	Adipose
21	chr6:146112400-146123000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:146112400-146125400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:146112400-146125400	Weak transcription	Fetal Stomach	stomach
24	chr6:146112400-146125600	Weak transcription	Aorta	Aorta
25	chr6:146112400-146125600	Weak transcription	Brain Substantia Nigra	brain
26	chr6:146112400-146135000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:146112600-146121200	Weak transcription	Osteobl	bone
28	chr6:146112600-146122200	Weak transcription	Primary B cells from cord blood	blood
29	chr6:146112600-146124600	Weak transcription	Liver	Liver
30	chr6:146112600-146125800	Weak transcription	Fetal Brain Female	brain
31	chr6:146112800-146122000	Weak transcription	NHEK	skin
32	chr6:146113000-146123200	Weak transcription	HMEC	breast
33	chr6:146113200-146122200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr6:146113200-146122800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:146113400-146122800	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr6:146113400-146133600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr6:146113600-146122200	Weak transcription	Psoas Muscle	Psoas
38	chr6:146113600-146122800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr6:146113800-146119800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:146113800-146124000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:146113800-146126000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr6:146114200-146119200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:146114200-146122200	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr6:146114200-146122200	Weak transcription	A549	lung
45	chr6:146114200-146123000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:146114400-146119400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:146114400-146120200	Weak transcription	Dnd41	blood
48	chr6:146114400-146121200	Weak transcription	K562	blood
49	chr6:146114400-146123200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:146114400-146125400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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