Variant report

Variant	rs9497397
Chromosome Location	chr6:146020934-146020935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs7740548	1.00[AFR][1000 genomes]
rs7757714	1.00[AFR][1000 genomes]
rs7763999	0.86[AFR][1000 genomes]
rs9322032	0.86[AFR][1000 genomes]
rs9485006	1.00[AFR][1000 genomes]
rs9485011	1.00[AFR][1000 genomes]
rs9485013	1.00[AFR][1000 genomes]
rs9485014	1.00[AFR][1000 genomes]
rs9497340	1.00[AFR][1000 genomes]
rs9497341	1.00[AFR][1000 genomes]
rs9497351	0.86[AFR][1000 genomes]
rs9497353	1.00[AFR][1000 genomes]
rs9497356	1.00[AFR][1000 genomes]
rs9497367	1.00[AFR][1000 genomes]
rs9497369	1.00[AFR][1000 genomes]
rs9497370	1.00[AFR][1000 genomes]
rs9497371	1.00[AFR][1000 genomes]
rs9497372	1.00[AFR][1000 genomes]
rs9497373	1.00[AFR][1000 genomes]
rs9497375	1.00[AFR][1000 genomes]
rs9497377	0.86[AFR][1000 genomes]
rs9497383	1.00[AFR][1000 genomes]
rs9497394	0.86[AFR][1000 genomes]
rs9497399	0.86[AFR][1000 genomes]
rs9497400	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934064	chr6:146007547-146044233	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146003400-146033600	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:146003600-146029400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:146003800-146026600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:146003800-146029600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:146003800-146029600	Weak transcription	Ovary	ovary
6	chr6:146006800-146050000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:146007000-146022400	Weak transcription	Primary B cells from cord blood	blood
8	chr6:146007400-146043800	Weak transcription	Liver	Liver
9	chr6:146009600-146022400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:146011200-146029600	Weak transcription	Aorta	Aorta
11	chr6:146016000-146026800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:146019400-146021400	Enhancers	NH-A	brain
13	chr6:146019800-146021400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:146019800-146021400	Enhancers	NHEK	skin
15	chr6:146019800-146022000	Enhancers	HUVEC	blood vessel
16	chr6:146020000-146021000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:146020000-146021000	Enhancers	HMEC	breast
18	chr6:146020000-146021000	Enhancers	HSMM	muscle
19	chr6:146020000-146021600	Enhancers	NHDF-Ad	bronchial
20	chr6:146020200-146021000	Enhancers	Osteobl	bone
21	chr6:146020200-146035000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:146020400-146021000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:146020400-146021000	Flanking Active TSS	A549	lung
24	chr6:146020400-146021000	Enhancers	NHLF	lung
25	chr6:146020400-146021200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:146020400-146021400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:146020400-146029400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:146020600-146026600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:146020600-146026600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:146020800-146021000	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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