Variant report

Variant	rs9322032
Chromosome Location	chr6:146031955-146031956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs7740548	0.86[AFR][1000 genomes]
rs7757714	0.86[AFR][1000 genomes]
rs7763999	1.00[AFR][1000 genomes]
rs9485006	0.86[AFR][1000 genomes]
rs9485011	0.86[AFR][1000 genomes]
rs9485013	0.86[AFR][1000 genomes]
rs9485014	0.86[AFR][1000 genomes]
rs9497340	0.86[AFR][1000 genomes]
rs9497341	0.86[AFR][1000 genomes]
rs9497353	0.86[AFR][1000 genomes]
rs9497356	0.86[AFR][1000 genomes]
rs9497367	0.86[AFR][1000 genomes]
rs9497369	0.86[AFR][1000 genomes]
rs9497370	0.86[AFR][1000 genomes]
rs9497371	0.86[AFR][1000 genomes]
rs9497372	0.86[AFR][1000 genomes]
rs9497373	0.86[AFR][1000 genomes]
rs9497375	0.86[AFR][1000 genomes]
rs9497377	1.00[AFR][1000 genomes]
rs9497383	0.86[AFR][1000 genomes]
rs9497394	1.00[AFR][1000 genomes]
rs9497397	0.86[AFR][1000 genomes]
rs9497399	1.00[AFR][1000 genomes]
rs9497400	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934064	chr6:146007547-146044233	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146003400-146033600	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:146006800-146050000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:146007400-146043800	Weak transcription	Liver	Liver
4	chr6:146020200-146035000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:146026800-146055800	Weak transcription	Left Ventricle	heart
6	chr6:146027000-146035800	Weak transcription	Thymus	Thymus
7	chr6:146027200-146034400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:146027600-146043400	Weak transcription	Psoas Muscle	Psoas
9	chr6:146027800-146035000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:146028600-146049200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:146028800-146035000	Weak transcription	Primary T cells from cord blood	blood
12	chr6:146029800-146033600	Weak transcription	Primary B cells from cord blood	blood
13	chr6:146029800-146034800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:146029800-146037800	Weak transcription	Right Ventricle	heart
15	chr6:146030000-146032400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:146030000-146034200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:146030000-146035000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:146030000-146036000	Weak transcription	Ovary	ovary
19	chr6:146030000-146043000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:146030200-146035600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:146030200-146036400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:146030200-146037800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:146030200-146054000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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