The 2.0 version of rSNPBase

Variant report

Variant rs28693971
Chromosome Location chr5:68587109-68587110
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:100 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:68531400-68605000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr5:68541200-68620400 Weak transcription Stomach Mucosa stomach
3 chr5:68552200-68588000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr5:68553800-68587800 Weak transcription Colonic Mucosa Colon
5 chr5:68554200-68604400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
6 chr5:68564200-68611200 Weak transcription Fetal Brain Male brain
7 chr5:68565600-68627400 Weak transcription Primary T killer naive cells fromperipheralblood blood
8 chr5:68566000-68591000 Strong transcription Primary neutrophils fromperipheralblood blood
9 chr5:68566800-68610800 Weak transcription Primary T helper naive cells from peripheral blood blood
10 chr5:68573000-68587800 Weak transcription Hela-S3 cervix
11 chr5:68573000-68590600 Weak transcription HUVEC blood vessel
12 chr5:68575600-68605000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr5:68575600-68608200 Weak transcription Right Ventricle heart
14 chr5:68576000-68605200 Weak transcription Left Ventricle heart
15 chr5:68576200-68590600 Weak transcription iPS-20b Cell Line embryonic stem cell
16 chr5:68576200-68605200 Weak transcription Brain Cingulate Gyrus brain
17 chr5:68576200-68609400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
18 chr5:68576400-68591000 Weak transcription Muscle Satellite Cultured Cells --
19 chr5:68576400-68593000 Weak transcription HMEC breast
20 chr5:68576400-68614400 Weak transcription Colon Smooth Muscle Colon
21 chr5:68576400-68627600 Weak transcription Brain Substantia Nigra brain
22 chr5:68576400-68627800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
23 chr5:68576600-68595400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr5:68576600-68627800 Weak transcription Brain Angular Gyrus brain
25 chr5:68577000-68591200 Weak transcription HUES48 Cell Line embryonic stem cell
26 chr5:68577200-68601400 Weak transcription Aorta Aorta
27 chr5:68577400-68588400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr5:68577400-68590400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
29 chr5:68577400-68594400 Weak transcription Esophagus oesophagus
30 chr5:68577400-68605200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr5:68577400-68607800 Weak transcription Primary T regulatory cells fromperipheralblood blood
32 chr5:68577400-68628200 Weak transcription Small Intestine intestine
33 chr5:68577600-68590600 Weak transcription K562 blood
34 chr5:68577600-68619800 Weak transcription Fetal Muscle Trunk muscle
35 chr5:68577600-68627400 Weak transcription NHEK skin
36 chr5:68577800-68588000 Weak transcription Primary T helper cells PMA-I stimulated --
37 chr5:68577800-68626600 Weak transcription A549 lung
38 chr5:68578200-68590800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr5:68578800-68590600 Weak transcription Primary T helper cells fromperipheralblood blood
40 chr5:68579000-68590600 Weak transcription NH-A brain
41 chr5:68579000-68590600 Weak transcription Osteobl bone
42 chr5:68579000-68603600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr5:68580600-68594200 Weak transcription Primary T helper naive cells fromperipheralblood blood
44 chr5:68581600-68587800 Weak transcription Rectal Mucosa Donor 29 rectum
45 chr5:68581600-68588200 Weak transcription Ovary ovary
46 chr5:68581600-68590400 Weak transcription Thymus Thymus
47 chr5:68581600-68590800 Weak transcription Primary B cells from peripheral blood blood
48 chr5:68581600-68601200 Weak transcription Fetal Thymus thymus
49 chr5:68581600-68627600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr5:68581800-68587800 Weak transcription Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015