Variant report

Variant	rs28698266
Chromosome Location	chr4:149327296-149327297
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28407287	1.00[AMR][1000 genomes]
rs66506646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951978	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149297800-149350000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:149299000-149329000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:149307600-149336600	Weak transcription	Aorta	Aorta
4	chr4:149312800-149338800	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:149318600-149327400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:149318800-149346600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:149319000-149339000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr4:149319200-149335000	Weak transcription	Esophagus	oesophagus
9	chr4:149319200-149339200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:149319400-149334600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr4:149320400-149351800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:149321400-149328000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr4:149325600-149328400	Enhancers	Liver	Liver
14	chr4:149325800-149338600	Weak transcription	Brain Angular Gyrus	brain
15	chr4:149326400-149327400	Enhancers	Fetal Intestine Large	intestine
16	chr4:149326400-149327400	Enhancers	Left Ventricle	heart
17	chr4:149326400-149327800	Enhancers	Duodenum Mucosa	Duodenum
18	chr4:149326400-149327800	Enhancers	Pancreas	Pancrea
19	chr4:149326600-149327400	Enhancers	Small Intestine	intestine
20	chr4:149326800-149334600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr4:149327000-149328000	Weak transcription	Stomach Mucosa	stomach
22	chr4:149327000-149351000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr4:149327200-149327600	Weak transcription	Gastric	stomach
24	chr4:149327200-149327800	Enhancers	Fetal Stomach	stomach
25	chr4:149327200-149332800	Weak transcription	Right Ventricle	heart
26	chr4:149327200-149333200	Weak transcription	Ovary	ovary
27	chr4:149327200-149341200	Weak transcription	Psoas Muscle	Psoas
28	chr4:149327200-149341800	Weak transcription	Right Atrium	heart

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