Variant report

Variant	rs66506646
Chromosome Location	chr4:149339513-149339514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:149337372..149339764-chr4:149363521..149366889,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151623	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28407287	1.00[AMR][1000 genomes]
rs28698266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951978	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149297800-149350000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:149318800-149346600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr4:149320400-149351800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:149327000-149351000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:149327200-149341200	Weak transcription	Psoas Muscle	Psoas
6	chr4:149327200-149341800	Weak transcription	Right Atrium	heart
7	chr4:149327400-149346600	Weak transcription	Small Intestine	intestine
8	chr4:149327800-149346400	Weak transcription	Gastric	stomach
9	chr4:149327800-149346400	Weak transcription	Pancreas	Pancrea
10	chr4:149329600-149343800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:149334000-149341800	Weak transcription	Left Ventricle	heart
12	chr4:149335400-149346400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr4:149335400-149349200	Weak transcription	Fetal Heart	heart
14	chr4:149337000-149339800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr4:149337600-149343800	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr4:149338600-149339800	Enhancers	Brain Angular Gyrus	brain
17	chr4:149338600-149354800	Weak transcription	Colon Smooth Muscle	Colon
18	chr4:149339000-149340000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr4:149339000-149340800	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr4:149339000-149341400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr4:149339200-149340600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr4:149339400-149339800	Weak transcription	Stomach Mucosa	stomach
23	chr4:149339400-149340000	Enhancers	Brain Substantia Nigra	brain
24	chr4:149339400-149342200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr4:149339400-149344000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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