Variant report

Variant	rs28407287
Chromosome Location	chr4:149283084-149283085
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10025629	1.00[AFR][1000 genomes]
rs10029951	1.00[AFR][1000 genomes]
rs10034617	1.00[AFR][1000 genomes]
rs28408757	1.00[AFR][1000 genomes]
rs28663510	1.00[AFR][1000 genomes]
rs28696868	1.00[AFR][1000 genomes]
rs28698266	1.00[AMR][1000 genomes]
rs28702892	0.86[AFR][1000 genomes]
rs28723458	1.00[AFR][1000 genomes]
rs28798239	1.00[AFR][1000 genomes]
rs28897121	1.00[AFR][1000 genomes]
rs66506646	1.00[AMR][1000 genomes]
rs72950130	1.00[AFR][1000 genomes]
rs72950178	1.00[AFR][1000 genomes]
rs72950189	0.86[AFR][1000 genomes]
rs72950200	1.00[AFR][1000 genomes]
rs72950201	1.00[AFR][1000 genomes]
rs72951904	1.00[AFR][1000 genomes]
rs72951945	1.00[AFR][1000 genomes]
rs72951952	1.00[AFR][1000 genomes]
rs72951978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3584816	chr4:149254670-149293317	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149268200-149288000	Weak transcription	Small Intestine	intestine
2	chr4:149277000-149291000	Weak transcription	Left Ventricle	heart
3	chr4:149277000-149296800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:149277000-149306800	Weak transcription	Pancreas	Pancrea
5	chr4:149277200-149283800	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:149281200-149300800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:149281400-149290800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr4:149282200-149287800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr4:149282200-149289000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr4:149282200-149289000	Weak transcription	Gastric	stomach
11	chr4:149282400-149287800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:149282600-149283200	Enhancers	Right Atrium	heart
13	chr4:149282800-149284000	Weak transcription	Right Ventricle	heart
14	chr4:149282800-149287800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr4:149282800-149289200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr4:149282800-149296800	Weak transcription	Psoas Muscle	Psoas
17	chr4:149283000-149287800	Weak transcription	Fetal Heart	heart
18	chr4:149283000-149289000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr4:149283000-149299000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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