Variant report

Variant	rs72951945
Chromosome Location	chr4:149253391-149253392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10025629	1.00[AFR][1000 genomes]
rs10029951	1.00[AFR][1000 genomes]
rs10034617	1.00[AFR][1000 genomes]
rs28407287	1.00[AFR][1000 genomes]
rs28408757	1.00[AFR][1000 genomes]
rs28663510	1.00[AFR][1000 genomes]
rs28696868	1.00[AFR][1000 genomes]
rs28702892	0.86[AFR][1000 genomes]
rs28723458	1.00[AFR][1000 genomes]
rs28798239	1.00[AFR][1000 genomes]
rs28897121	1.00[AFR][1000 genomes]
rs72950130	1.00[AFR][1000 genomes]
rs72950178	1.00[AFR][1000 genomes]
rs72950189	0.86[AFR][1000 genomes]
rs72950200	1.00[AFR][1000 genomes]
rs72950201	1.00[AFR][1000 genomes]
rs72951904	1.00[AFR][1000 genomes]
rs72951952	1.00[AFR][1000 genomes]
rs72951978	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1019350	chr4:149232430-149282117	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149235000-149266800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:149244400-149257600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:149245400-149257200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr4:149249400-149261400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:149249400-149263200	Weak transcription	Right Atrium	heart
6	chr4:149249400-149271200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr4:149250000-149253800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:149251800-149253600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:149251800-149265000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr4:149252000-149267000	Weak transcription	Right Ventricle	heart
11	chr4:149252200-149253800	Weak transcription	Psoas Muscle	Psoas
12	chr4:149252200-149257200	Weak transcription	Left Ventricle	heart
13	chr4:149252200-149257600	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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