Variant report

Variant	rs28663510
Chromosome Location	chr4:149215855-149215856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:149213309..149216201-chr4:149362737..149365342,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151623	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10008249	1.00[AMR][1000 genomes]
rs10008590	1.00[AMR][1000 genomes]
rs10010607	1.00[AMR][1000 genomes]
rs10011595	1.00[AMR][1000 genomes]
rs10012283	1.00[AMR][1000 genomes]
rs10012907	1.00[AMR][1000 genomes]
rs10025629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10026826	1.00[AMR][1000 genomes]
rs10029951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10033445	1.00[AMR][1000 genomes]
rs10034151	1.00[AMR][1000 genomes]
rs10034617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11099685	1.00[AMR][1000 genomes]
rs2037480	1.00[AMR][1000 genomes]
rs28369259	1.00[AMR][1000 genomes]
rs28377573	1.00[AMR][1000 genomes]
rs28391722	1.00[AMR][1000 genomes]
rs28407287	1.00[AFR][1000 genomes]
rs28408757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28452605	1.00[AMR][1000 genomes]
rs28498606	1.00[AMR][1000 genomes]
rs28500506	1.00[AMR][1000 genomes]
rs28549338	1.00[AMR][1000 genomes]
rs28672384	1.00[AMR][1000 genomes]
rs28696003	1.00[AMR][1000 genomes]
rs28696868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28702892	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28723458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28798239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28837820	1.00[AMR][1000 genomes]
rs28848778	1.00[AMR][1000 genomes]
rs28886306	1.00[AMR][1000 genomes]
rs28897121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4087964	1.00[AMR][1000 genomes]
rs4087965	1.00[AMR][1000 genomes]
rs58411881	1.00[AMR][1000 genomes]
rs59699864	1.00[AMR][1000 genomes]
rs59761460	1.00[AMR][1000 genomes]
rs61760022	1.00[AMR][1000 genomes]
rs72950130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72950143	1.00[AMR][1000 genomes]
rs72950148	1.00[AMR][1000 genomes]
rs72950178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72950189	0.86[AFR][1000 genomes]
rs72950200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72950201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951945	1.00[AFR][1000 genomes]
rs72951952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951978	1.00[AFR][1000 genomes]
rs73855926	1.00[AMR][1000 genomes]
rs9997923	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149194400-149216400	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr4:149206400-149216600	Weak transcription	Right Atrium	heart
3	chr4:149206400-149231600	Weak transcription	Right Ventricle	heart
4	chr4:149209800-149216600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr4:149210000-149216600	Weak transcription	Pancreas	Pancrea
6	chr4:149210000-149220600	Weak transcription	Gastric	stomach
7	chr4:149211200-149220600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:149211400-149216400	Weak transcription	Left Ventricle	heart
9	chr4:149211400-149216600	Weak transcription	Psoas Muscle	Psoas
10	chr4:149213800-149216200	Enhancers	Fetal Intestine Small	intestine
11	chr4:149214600-149218000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr4:149215200-149217000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr4:149215200-149232800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr4:149215400-149216600	Weak transcription	Ovary	ovary
15	chr4:149215400-149220000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:149215400-149220600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:149215400-149222200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr4:149215400-149224600	Weak transcription	Small Intestine	intestine

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