Variant report

Variant	rs10008249
Chromosome Location	chr4:149130922-149130923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10008133	1.00[AMR][1000 genomes]
rs10008590	1.00[AMR][1000 genomes]
rs10009344	1.00[AMR][1000 genomes]
rs10010607	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10011595	1.00[AMR][1000 genomes]
rs10012283	1.00[AMR][1000 genomes]
rs10012907	1.00[AMR][1000 genomes]
rs10025629	1.00[AMR][1000 genomes]
rs10026826	1.00[AMR][1000 genomes]
rs10029241	1.00[AMR][1000 genomes]
rs10029666	1.00[AMR][1000 genomes]
rs10029951	1.00[AMR][1000 genomes]
rs10031581	1.00[AMR][1000 genomes]
rs10032952	1.00[AMR][1000 genomes]
rs10033445	1.00[AMR][1000 genomes]
rs10034151	1.00[AMR][1000 genomes]
rs10034617	1.00[AMR][1000 genomes]
rs11099685	1.00[AMR][1000 genomes]
rs2037480	1.00[AMR][1000 genomes]
rs28369259	1.00[AMR][1000 genomes]
rs28375864	1.00[AMR][1000 genomes]
rs28377573	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28391722	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28408757	1.00[AMR][1000 genomes]
rs28452605	1.00[AMR][1000 genomes]
rs28498606	1.00[AMR][1000 genomes]
rs28500506	1.00[AMR][1000 genomes]
rs28519574	1.00[AMR][1000 genomes]
rs28544401	1.00[AMR][1000 genomes]
rs28549338	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28572262	1.00[AMR][1000 genomes]
rs28615270	1.00[AMR][1000 genomes]
rs28633738	1.00[AMR][1000 genomes]
rs28663510	1.00[AMR][1000 genomes]
rs28672384	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28696003	1.00[AMR][1000 genomes]
rs28696868	1.00[AMR][1000 genomes]
rs28702892	1.00[AMR][1000 genomes]
rs28723458	1.00[AMR][1000 genomes]
rs28759001	1.00[AMR][1000 genomes]
rs28798239	1.00[AMR][1000 genomes]
rs28837820	1.00[AMR][1000 genomes]
rs28848778	1.00[AMR][1000 genomes]
rs28886306	1.00[AMR][1000 genomes]
rs28897121	1.00[AMR][1000 genomes]
rs4087964	1.00[AMR][1000 genomes]
rs4087965	1.00[AMR][1000 genomes]
rs58411881	1.00[AMR][1000 genomes]
rs59699864	1.00[AMR][1000 genomes]
rs59761460	1.00[AMR][1000 genomes]
rs60042934	1.00[AMR][1000 genomes]
rs72950130	1.00[AMR][1000 genomes]
rs72950143	1.00[AMR][1000 genomes]
rs72950148	1.00[AMR][1000 genomes]
rs72950178	1.00[AMR][1000 genomes]
rs72950200	1.00[AMR][1000 genomes]
rs72950201	1.00[AMR][1000 genomes]
rs72951904	1.00[AMR][1000 genomes]
rs72951952	1.00[AMR][1000 genomes]
rs73853714	1.00[AMR][1000 genomes]
rs73855926	1.00[AMR][1000 genomes]
rs9996205	1.00[AMR][1000 genomes]
rs9997923	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149112400-149137400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr4:149114200-149131400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:149115800-149137400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:149117200-149138000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:149123600-149150200	Weak transcription	Right Ventricle	heart
6	chr4:149124000-149131600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:149124000-149133200	Weak transcription	Left Ventricle	heart
8	chr4:149124000-149133400	Weak transcription	Pancreas	Pancrea
9	chr4:149124000-149136400	Weak transcription	Brain Angular Gyrus	brain
10	chr4:149125000-149132800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:149125000-149133400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:149125000-149135600	Weak transcription	Ovary	ovary
13	chr4:149125200-149132800	Weak transcription	Aorta	Aorta
14	chr4:149125200-149136000	Weak transcription	Psoas Muscle	Psoas
15	chr4:149125600-149132000	Weak transcription	Colon Smooth Muscle	Colon
16	chr4:149126000-149135600	Weak transcription	Brain Substantia Nigra	brain
17	chr4:149126000-149136600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr4:149126200-149135400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr4:149126400-149131200	Weak transcription	Fetal Kidney	kidney
20	chr4:149127000-149135400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr4:149127200-149132000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:149127200-149132200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr4:149128800-149131400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr4:149129600-149133400	Weak transcription	Lung	lung
25	chr4:149130000-149131000	Weak transcription	Spleen	Spleen
26	chr4:149130400-149133800	Enhancers	Stomach Smooth Muscle	stomach
27	chr4:149130400-149138800	Enhancers	Fetal Heart	heart

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