Variant report

Variant	rs28498606
Chromosome Location	chr4:149178367-149178368
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10008133	1.00[AMR][1000 genomes]
rs10008249	1.00[AMR][1000 genomes]
rs10008590	1.00[AMR][1000 genomes]
rs10010607	1.00[AMR][1000 genomes]
rs10011595	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10012283	1.00[AMR][1000 genomes]
rs10012907	1.00[AMR][1000 genomes]
rs10025629	1.00[AMR][1000 genomes]
rs10026826	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10029951	1.00[AMR][1000 genomes]
rs10033445	1.00[AMR][1000 genomes]
rs10034151	1.00[AMR][1000 genomes]
rs10034617	1.00[AMR][1000 genomes]
rs11099685	1.00[AMR][1000 genomes]
rs17581220	0.84[AFR][1000 genomes]
rs17581262	0.84[AFR][1000 genomes]
rs2037480	1.00[AMR][1000 genomes]
rs28369259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28377573	1.00[AMR][1000 genomes]
rs28391722	1.00[AMR][1000 genomes]
rs28408757	1.00[AMR][1000 genomes]
rs28452605	1.00[AMR][1000 genomes]
rs28500506	1.00[AMR][1000 genomes]
rs28544401	1.00[AMR][1000 genomes]
rs28549338	1.00[AMR][1000 genomes]
rs28572262	1.00[AMR][1000 genomes]
rs28663510	1.00[AMR][1000 genomes]
rs28672384	1.00[AMR][1000 genomes]
rs28696003	1.00[AMR][1000 genomes]
rs28696868	1.00[AMR][1000 genomes]
rs28702892	1.00[AMR][1000 genomes]
rs28723458	1.00[AMR][1000 genomes]
rs28759001	1.00[AMR][1000 genomes]
rs28798239	1.00[AMR][1000 genomes]
rs28837820	1.00[AMR][1000 genomes]
rs28848778	1.00[AMR][1000 genomes]
rs28886306	1.00[AMR][1000 genomes]
rs28897121	1.00[AMR][1000 genomes]
rs4087964	1.00[AMR][1000 genomes]
rs4087965	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58411881	1.00[AMR][1000 genomes]
rs59699864	1.00[AMR][1000 genomes]
rs59761460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61760022	1.00[AMR][1000 genomes]
rs68001401	0.84[AFR][1000 genomes]
rs72950130	1.00[AMR][1000 genomes]
rs72950143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72950148	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72950178	1.00[AMR][1000 genomes]
rs72950200	1.00[AMR][1000 genomes]
rs72950201	1.00[AMR][1000 genomes]
rs72951904	1.00[AMR][1000 genomes]
rs72951952	1.00[AMR][1000 genomes]
rs73853714	1.00[AMR][1000 genomes]
rs73855926	1.00[AMR][1000 genomes]
rs9997923	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880245	chr4:149132756-149183374	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149160800-149179800	Weak transcription	Psoas Muscle	Psoas
2	chr4:149171000-149183600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr4:149171200-149178800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:149172000-149179400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:149175200-149179600	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:149175600-149182400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr4:149175600-149195000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:149175800-149179400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:149175800-149179600	Weak transcription	Right Ventricle	heart
10	chr4:149176400-149179200	Weak transcription	Left Ventricle	heart
11	chr4:149176400-149182400	Weak transcription	Pancreas	Pancrea
12	chr4:149176400-149186400	Weak transcription	Fetal Intestine Small	intestine
13	chr4:149176400-149188400	Weak transcription	Right Atrium	heart
14	chr4:149176800-149179200	Weak transcription	Colon Smooth Muscle	Colon
15	chr4:149177000-149179800	Weak transcription	Fetal Kidney	kidney
16	chr4:149177200-149179400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr4:149177200-149184400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr4:149177200-149194800	Weak transcription	Small Intestine	intestine
19	chr4:149177400-149184600	Weak transcription	HUVEC	blood vessel
20	chr4:149177400-149184800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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