Variant report

Variant	rs11099685
Chromosome Location	chr4:149204602-149204603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10008249	1.00[AMR][1000 genomes]
rs10008590	1.00[AMR][1000 genomes]
rs10010607	1.00[AMR][1000 genomes]
rs10011595	1.00[ASW][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10012283	1.00[AMR][1000 genomes]
rs10012907	1.00[AMR][1000 genomes]
rs10025629	1.00[AMR][1000 genomes]
rs10026826	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10029951	1.00[AMR][1000 genomes]
rs10033445	1.00[AMR][1000 genomes]
rs10034151	1.00[AMR][1000 genomes]
rs10034617	1.00[AMR][1000 genomes]
rs17581262	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs2037480	1.00[AMR][1000 genomes]
rs28369259	1.00[AMR][1000 genomes]
rs28377573	1.00[AMR][1000 genomes]
rs28391722	1.00[AMR][1000 genomes]
rs28408757	1.00[AMR][1000 genomes]
rs28452605	1.00[AMR][1000 genomes]
rs28498606	1.00[AMR][1000 genomes]
rs28500506	1.00[AMR][1000 genomes]
rs28549338	1.00[AMR][1000 genomes]
rs28663510	1.00[AMR][1000 genomes]
rs28672384	1.00[AMR][1000 genomes]
rs28696003	1.00[AMR][1000 genomes]
rs28696868	1.00[AMR][1000 genomes]
rs28702892	1.00[AMR][1000 genomes]
rs28723458	1.00[AMR][1000 genomes]
rs28798239	1.00[AMR][1000 genomes]
rs28837820	1.00[AMR][1000 genomes]
rs28848778	1.00[AMR][1000 genomes]
rs28886306	1.00[AMR][1000 genomes]
rs28897121	1.00[AMR][1000 genomes]
rs4087964	1.00[AMR][1000 genomes]
rs4087965	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58411881	1.00[AMR][1000 genomes]
rs59699864	1.00[AMR][1000 genomes]
rs59761460	1.00[AMR][1000 genomes]
rs61760022	1.00[AMR][1000 genomes]
rs72950130	1.00[AMR][1000 genomes]
rs72950143	1.00[AMR][1000 genomes]
rs72950148	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72950178	1.00[AMR][1000 genomes]
rs72950200	1.00[AMR][1000 genomes]
rs72950201	1.00[AMR][1000 genomes]
rs72951904	1.00[AMR][1000 genomes]
rs72951952	1.00[AMR][1000 genomes]
rs73855926	1.00[AMR][1000 genomes]
rs9997923	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149192400-149209400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:149194400-149216400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr4:149195200-149207600	Weak transcription	Brain Angular Gyrus	brain
4	chr4:149195800-149205000	Weak transcription	Gastric	stomach
5	chr4:149196800-149209600	Weak transcription	Pancreas	Pancrea
6	chr4:149199600-149209600	Weak transcription	Left Ventricle	heart
7	chr4:149202800-149206600	Enhancers	Fetal Heart	heart
8	chr4:149203200-149206000	Enhancers	Fetal Intestine Large	intestine
9	chr4:149203200-149206400	Enhancers	Right Ventricle	heart
10	chr4:149203600-149204800	Enhancers	Fetal Intestine Small	intestine
11	chr4:149203600-149205000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:149203600-149205400	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr4:149203600-149205600	Enhancers	Adipose Nuclei	Adipose
14	chr4:149203600-149206400	Enhancers	Fetal Lung	lung
15	chr4:149203600-149206400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr4:149203600-149207000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr4:149203800-149204800	Enhancers	Small Intestine	intestine
18	chr4:149203800-149205200	Enhancers	Stomach Mucosa	stomach
19	chr4:149203800-149205800	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr4:149203800-149206200	Enhancers	Colon Smooth Muscle	Colon
21	chr4:149204000-149208000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr4:149204000-149209600	Weak transcription	Aorta	Aorta
23	chr4:149204200-149204800	Enhancers	Brain Cingulate Gyrus	brain
24	chr4:149204200-149205200	Weak transcription	Psoas Muscle	Psoas
25	chr4:149204200-149205200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr4:149204200-149205200	Weak transcription	Right Atrium	heart
27	chr4:149204200-149206200	Enhancers	Duodenum Mucosa	Duodenum
28	chr4:149204200-149208400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:149204200-149209400	Weak transcription	Colonic Mucosa	Colon
30	chr4:149204400-149204800	Weak transcription	Ovary	ovary
31	chr4:149204400-149205200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr4:149204400-149205600	Weak transcription	Brain Hippocampus Middle	brain
33	chr4:149204400-149206800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr4:149204400-149207400	Weak transcription	Brain Anterior Caudate	brain
35	chr4:149204600-149204800	Flanking Active TSS	Liver	Liver
36	chr4:149204600-149205000	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links