Variant report

Variant	rs72950148
Chromosome Location	chr4:149188234-149188235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10008249	1.00[AMR][1000 genomes]
rs10008590	1.00[AMR][1000 genomes]
rs10010607	1.00[AMR][1000 genomes]
rs10011595	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10012283	1.00[AMR][1000 genomes]
rs10012907	1.00[AMR][1000 genomes]
rs10025629	1.00[AMR][1000 genomes]
rs10026826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10029951	1.00[AMR][1000 genomes]
rs10033445	1.00[AMR][1000 genomes]
rs10034151	1.00[AMR][1000 genomes]
rs10034617	1.00[AMR][1000 genomes]
rs11099685	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2037480	1.00[AMR][1000 genomes]
rs28369259	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28377573	1.00[AMR][1000 genomes]
rs28391722	1.00[AMR][1000 genomes]
rs28408757	1.00[AMR][1000 genomes]
rs28452605	1.00[AMR][1000 genomes]
rs28498606	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28500506	1.00[AMR][1000 genomes]
rs28549338	1.00[AMR][1000 genomes]
rs28572262	1.00[AMR][1000 genomes]
rs28663510	1.00[AMR][1000 genomes]
rs28672384	1.00[AMR][1000 genomes]
rs28696003	1.00[AMR][1000 genomes]
rs28696868	1.00[AMR][1000 genomes]
rs28702892	1.00[AMR][1000 genomes]
rs28723458	1.00[AMR][1000 genomes]
rs28759001	1.00[AMR][1000 genomes]
rs28798239	1.00[AMR][1000 genomes]
rs28837820	1.00[AMR][1000 genomes]
rs28848778	1.00[AMR][1000 genomes]
rs28886306	1.00[AMR][1000 genomes]
rs28897121	1.00[AMR][1000 genomes]
rs4087964	1.00[AMR][1000 genomes]
rs4087965	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58411881	1.00[AMR][1000 genomes]
rs59699864	1.00[AMR][1000 genomes]
rs59761460	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61760022	1.00[AMR][1000 genomes]
rs72950130	1.00[AMR][1000 genomes]
rs72950143	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72950178	1.00[AMR][1000 genomes]
rs72950200	1.00[AMR][1000 genomes]
rs72950201	1.00[AMR][1000 genomes]
rs72951904	1.00[AMR][1000 genomes]
rs72951952	1.00[AMR][1000 genomes]
rs73853714	1.00[AMR][1000 genomes]
rs73855926	1.00[AMR][1000 genomes]
rs9997923	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149175600-149195000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:149176400-149188400	Weak transcription	Right Atrium	heart
3	chr4:149177200-149194800	Weak transcription	Small Intestine	intestine
4	chr4:149180000-149194600	Weak transcription	Left Ventricle	heart
5	chr4:149181200-149194800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:149182600-149194800	Weak transcription	Esophagus	oesophagus
7	chr4:149183000-149189800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:149183000-149194800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:149184600-149189600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:149184600-149194600	Weak transcription	Ovary	ovary
11	chr4:149186000-149194800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:149186200-149194800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr4:149186400-149188600	Enhancers	Fetal Intestine Large	intestine
14	chr4:149186400-149188600	Enhancers	Fetal Intestine Small	intestine
15	chr4:149187400-149194800	Weak transcription	Brain Angular Gyrus	brain
16	chr4:149187600-149188400	Enhancers	Fetal Heart	heart
17	chr4:149187600-149188600	Enhancers	Pancreas	Pancrea
18	chr4:149187800-149191600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr4:149187800-149194800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr4:149188000-149194800	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links