Variant report

Variant	rs28369259
Chromosome Location	chr4:149168106-149168107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10008133	1.00[AMR][1000 genomes]
rs10008249	1.00[AMR][1000 genomes]
rs10008590	1.00[AMR][1000 genomes]
rs10010607	1.00[AMR][1000 genomes]
rs10011595	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10012283	1.00[AMR][1000 genomes]
rs10012907	1.00[AMR][1000 genomes]
rs10025629	1.00[AMR][1000 genomes]
rs10026826	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10029951	1.00[AMR][1000 genomes]
rs10033445	1.00[AMR][1000 genomes]
rs10034151	1.00[AMR][1000 genomes]
rs10034617	1.00[AMR][1000 genomes]
rs11099685	1.00[AMR][1000 genomes]
rs17581220	0.84[AFR][1000 genomes]
rs17581262	0.84[AFR][1000 genomes]
rs2037480	1.00[AMR][1000 genomes]
rs28377573	1.00[AMR][1000 genomes]
rs28391722	1.00[AMR][1000 genomes]
rs28408757	1.00[AMR][1000 genomes]
rs28452605	1.00[AMR][1000 genomes]
rs28498606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28500506	1.00[AMR][1000 genomes]
rs28544401	1.00[AMR][1000 genomes]
rs28549338	1.00[AMR][1000 genomes]
rs28572262	1.00[AMR][1000 genomes]
rs28663510	1.00[AMR][1000 genomes]
rs28672384	1.00[AMR][1000 genomes]
rs28696003	1.00[AMR][1000 genomes]
rs28696868	1.00[AMR][1000 genomes]
rs28702892	1.00[AMR][1000 genomes]
rs28723458	1.00[AMR][1000 genomes]
rs28759001	1.00[AMR][1000 genomes]
rs28798239	1.00[AMR][1000 genomes]
rs28837820	1.00[AMR][1000 genomes]
rs28848778	1.00[AMR][1000 genomes]
rs28886306	1.00[AMR][1000 genomes]
rs28897121	1.00[AMR][1000 genomes]
rs4087964	1.00[AMR][1000 genomes]
rs4087965	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58411881	1.00[AMR][1000 genomes]
rs59699864	1.00[AMR][1000 genomes]
rs59761460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61760022	1.00[AMR][1000 genomes]
rs68001401	0.84[AFR][1000 genomes]
rs72950130	1.00[AMR][1000 genomes]
rs72950143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72950148	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72950178	1.00[AMR][1000 genomes]
rs72950200	1.00[AMR][1000 genomes]
rs72950201	1.00[AMR][1000 genomes]
rs72951904	1.00[AMR][1000 genomes]
rs72951952	1.00[AMR][1000 genomes]
rs73853714	1.00[AMR][1000 genomes]
rs73855926	1.00[AMR][1000 genomes]
rs9997923	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880245	chr4:149132756-149183374	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149140000-149170800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr4:149156400-149172600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr4:149160800-149179800	Weak transcription	Psoas Muscle	Psoas
4	chr4:149161200-149172000	Weak transcription	Right Atrium	heart
5	chr4:149165800-149171000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:149166600-149174400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr4:149166800-149171400	Weak transcription	Fetal Heart	heart
8	chr4:149167000-149168800	Weak transcription	Rectal Mucosa Donor 31	rectum

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