Variant report

Variant	rs10031581
Chromosome Location	chr4:148935897-148935898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10008133	1.00[AMR][1000 genomes]
rs10008249	1.00[AMR][1000 genomes]
rs10008590	1.00[AMR][1000 genomes]
rs10009344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10010607	1.00[AMR][1000 genomes]
rs10012283	1.00[AMR][1000 genomes]
rs10012907	1.00[AMR][1000 genomes]
rs10025629	1.00[AMR][1000 genomes]
rs10029241	1.00[AMR][1000 genomes]
rs10029666	1.00[AMR][1000 genomes]
rs10032952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10034151	1.00[AMR][1000 genomes]
rs2037480	1.00[AMR][1000 genomes]
rs28375864	1.00[AMR][1000 genomes]
rs28377573	1.00[AMR][1000 genomes]
rs28391722	1.00[AMR][1000 genomes]
rs28500506	1.00[AMR][1000 genomes]
rs28519574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28529145	1.00[AMR][1000 genomes]
rs28544401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28549338	1.00[AMR][1000 genomes]
rs28572262	1.00[AMR][1000 genomes]
rs28592193	1.00[AMR][1000 genomes]
rs28615270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28633738	1.00[AMR][1000 genomes]
rs28672384	1.00[AMR][1000 genomes]
rs28696003	1.00[AMR][1000 genomes]
rs28759001	1.00[AMR][1000 genomes]
rs28837820	1.00[AMR][1000 genomes]
rs28886306	1.00[AMR][1000 genomes]
rs58411881	1.00[AMR][1000 genomes]
rs59699864	1.00[AMR][1000 genomes]
rs60042934	1.00[AMR][1000 genomes]
rs73853714	1.00[AMR][1000 genomes]
rs73855926	1.00[AMR][1000 genomes]
rs9996205	1.00[AMR][1000 genomes]
rs9997923	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017904	chr4:148814133-148975348	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148885600-148939000	Weak transcription	Pancreas	Pancrea
2	chr4:148889200-148936200	Weak transcription	Fetal Intestine Large	intestine
3	chr4:148911600-148936200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:148918000-148968000	Weak transcription	Gastric	stomach
5	chr4:148918200-148937000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:148921000-148945000	Weak transcription	Esophagus	oesophagus
7	chr4:148928800-148965400	Weak transcription	Lung	lung
8	chr4:148929200-148955400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:148929400-148938400	Weak transcription	Fetal Heart	heart
10	chr4:148929400-148942800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:148929600-148944200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:148929600-148944400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:148929800-148936200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:148929800-148936200	Weak transcription	Ovary	ovary
15	chr4:148929800-148936400	Weak transcription	Psoas Muscle	Psoas
16	chr4:148929800-148936400	Weak transcription	Right Atrium	heart
17	chr4:148929800-148936400	Weak transcription	Right Ventricle	heart
18	chr4:148929800-148937000	Weak transcription	HSMM	muscle
19	chr4:148929800-148944400	Weak transcription	HSMMtube	muscle
20	chr4:148929800-148947200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:148930000-148939000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:148930000-148944400	Weak transcription	NHLF	lung
23	chr4:148930000-148947600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:148930200-148939000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:148930800-148939000	Weak transcription	Brain Angular Gyrus	brain
26	chr4:148932800-148937000	Weak transcription	Aorta	Aorta
27	chr4:148932800-148938600	Weak transcription	Fetal Stomach	stomach
28	chr4:148933400-148938200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:148933600-148936200	Weak transcription	Left Ventricle	heart
30	chr4:148933600-148936200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr4:148935000-148936400	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr4:148935200-148937000	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr4:148935600-148936000	Weak transcription	GM12878-XiMat	blood
34	chr4:148935600-148936200	Enhancers	Colon Smooth Muscle	Colon
35	chr4:148935600-148936200	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr4:148935600-148936600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr4:148935600-148936600	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr4:148935600-148936800	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr4:148935800-148936000	Enhancers	Brain Hippocampus Middle	brain
40	chr4:148935800-148936400	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr4:148935800-148936800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr4:148935800-148936800	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr4:148935800-148936800	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr4:148935800-148936800	Enhancers	HepG2	liver
45	chr4:148935800-148937000	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr4:148935800-148937000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr4:148935800-148937400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links