Variant report

Variant	rs72950189
Chromosome Location	chr4:149216347-149216348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10025629	0.86[AFR][1000 genomes]
rs10029951	0.86[AFR][1000 genomes]
rs10034617	0.86[AFR][1000 genomes]
rs28407287	0.86[AFR][1000 genomes]
rs28408757	0.86[AFR][1000 genomes]
rs28663510	0.86[AFR][1000 genomes]
rs28696868	0.86[AFR][1000 genomes]
rs28723458	0.86[AFR][1000 genomes]
rs28798239	0.86[AFR][1000 genomes]
rs28897121	0.86[AFR][1000 genomes]
rs72655223	1.00[EUR][1000 genomes]
rs72950130	0.86[AFR][1000 genomes]
rs72950178	0.86[AFR][1000 genomes]
rs72950200	0.86[AFR][1000 genomes]
rs72950201	0.86[AFR][1000 genomes]
rs72951904	0.86[AFR][1000 genomes]
rs72951945	0.86[AFR][1000 genomes]
rs72951952	0.86[AFR][1000 genomes]
rs72951978	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149194400-149216400	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr4:149206400-149216600	Weak transcription	Right Atrium	heart
3	chr4:149206400-149231600	Weak transcription	Right Ventricle	heart
4	chr4:149209800-149216600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr4:149210000-149216600	Weak transcription	Pancreas	Pancrea
6	chr4:149210000-149220600	Weak transcription	Gastric	stomach
7	chr4:149211200-149220600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:149211400-149216400	Weak transcription	Left Ventricle	heart
9	chr4:149211400-149216600	Weak transcription	Psoas Muscle	Psoas
10	chr4:149214600-149218000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr4:149215200-149217000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr4:149215200-149232800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr4:149215400-149216600	Weak transcription	Ovary	ovary
14	chr4:149215400-149220000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr4:149215400-149220600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:149215400-149222200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr4:149215400-149224600	Weak transcription	Small Intestine	intestine
18	chr4:149216200-149220000	Weak transcription	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links