Variant report

Variant	rs28710220
Chromosome Location	chr16:34741491-34741492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr16:34740828-34741529	SK-N-SH_RA	brain:	n/a	chr16:34741049-34741063
2	MAX	chr16:34740915-34741538	ECC-1	luminal epithelium:	n/a	chr16:34741327-34741337
3	ELF1	chr16:34740729-34741495	SK-N-SH	brain:	n/a	chr16:34741301-34741313
4	POLR2A	chr16:34740157-34741584	SK-N-SH	brain:	n/a	n/a
5	POLR2A	chr16:34740671-34741503	ECC-1	luminal epithelium:	n/a	n/a
6	MAX	chr16:34740156-34741744	SK-N-SH	brain:	n/a	chr16:34741327-34741337 chr16:34740696-34740705
7	MAX	chr16:34740051-34741568	SK-N-SH	brain:	n/a	chr16:34741327-34741337 chr16:34740696-34740705
8	EGR1	chr16:34741246-34741740	ECC-1	luminal epithelium:	n/a	chr16:34741444-34741457 chr16:34741577-34741590
9	NRF1	chr16:34739847-34742406	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000269622	TF binding region
ENSG00000260857	TF binding region

Extended variants
information (count: 356 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1094595	1.00[EUR][1000 genomes]
rs11861245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11862339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11862408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11863810	1.00[AMR][1000 genomes]
rs11865286	0.83[EUR][1000 genomes]
rs12102949	0.83[EUR][1000 genomes]
rs13331101	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13332284	0.83[EUR][1000 genomes]
rs1583338	0.83[EUR][1000 genomes]
rs17052142	0.83[EUR][1000 genomes]
rs17052144	0.83[EUR][1000 genomes]
rs17052149	0.83[EUR][1000 genomes]
rs17052150	0.83[EUR][1000 genomes]
rs17052151	0.83[EUR][1000 genomes]
rs171123	0.83[EUR][1000 genomes]
rs17841567	0.83[EUR][1000 genomes]
rs17841578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1833215	0.83[EUR][1000 genomes]
rs237977	0.83[EUR][1000 genomes]
rs237981	0.83[EUR][1000 genomes]
rs237988	1.00[EUR][1000 genomes]
rs237991	1.00[EUR][1000 genomes]
rs237992	0.83[EUR][1000 genomes]
rs28368765	0.83[EUR][1000 genomes]
rs28476565	0.83[EUR][1000 genomes]
rs28489613	0.83[EUR][1000 genomes]
rs28492033	0.83[EUR][1000 genomes]
rs28504660	0.83[EUR][1000 genomes]
rs35852265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3853179	0.83[EUR][1000 genomes]
rs42559	0.83[EUR][1000 genomes]
rs4627360	0.83[EUR][1000 genomes]
rs55947128	0.83[EUR][1000 genomes]
rs58227353	0.83[EUR][1000 genomes]
rs58309049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58334121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58874752	0.83[EUR][1000 genomes]
rs60510786	0.83[EUR][1000 genomes]
rs61287001	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6563868	0.83[EUR][1000 genomes]
rs6563869	0.83[EUR][1000 genomes]
rs6563876	0.83[EUR][1000 genomes]
rs6563877	0.83[EUR][1000 genomes]
rs7185642	0.83[EUR][1000 genomes]
rs7186948	0.83[EUR][1000 genomes]
rs7187312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7204365	0.83[EUR][1000 genomes]
rs7205016	0.83[EUR][1000 genomes]
rs74015953	0.83[EUR][1000 genomes]
rs74015990	0.83[EUR][1000 genomes]
rs74015995	0.83[EUR][1000 genomes]
rs74018408	0.83[EUR][1000 genomes]
rs74018435	0.83[EUR][1000 genomes]
rs74018436	0.83[EUR][1000 genomes]
rs8045606	0.83[EUR][1000 genomes]
rs8048302	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8059333	0.83[EUR][1000 genomes]
rs822448	0.83[EUR][1000 genomes]
rs822693	0.83[EUR][1000 genomes]
rs9319436	0.83[EUR][1000 genomes]
rs9673348	0.83[EUR][1000 genomes]
rs9921911	1.00[EUR][1000 genomes]
rs9923316	1.00[EUR][1000 genomes]
rs9923445	0.83[EUR][1000 genomes]
rs9924407	1.00[EUR][1000 genomes]
rs9926843	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9927120	1.00[EUR][1000 genomes]
rs9932621	0.83[EUR][1000 genomes]
rs9932932	0.83[EUR][1000 genomes]
rs9936590	1.00[EUR][1000 genomes]
rs9936796	0.83[EUR][1000 genomes]
rs9937317	0.83[EUR][1000 genomes]
rs9939409	0.83[EUR][1000 genomes]
rs9940300	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:281 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431453	chr16:33940200-34760967	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
2	nsv1067686	chr16:34202088-35147508	ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
3	nsv532260	chr16:34202088-35147508	Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
4	nsv521817	chr16:34221454-35168832	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
5	nsv521994	chr16:34221454-35168832	Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
6	nsv516385	chr16:34259805-34805859	ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
7	esv2751557	chr16:34263599-34757071	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
8	nsv431454	chr16:34321463-34790434	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
9	nsv428326	chr16:34357763-34769642	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	nsv431455	chr16:34359599-34796499	ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
11	esv2758422	chr16:34362213-34769642	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
12	esv2751558	chr16:34410569-34757071	Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
13	nsv431458	chr16:34421701-34760999	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
14	esv2757636	chr16:34436185-35042935	ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
15	esv2751563	chr16:34437589-34757071	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
16	esv2751564	chr16:34437589-34757071	ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
17	esv2751565	chr16:34437589-34757071	Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
18	esv2751566	chr16:34437589-34757071	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
19	esv2751567	chr16:34437589-34757071	Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
20	esv2753319	chr16:34437589-34757071	Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
21	esv2753561	chr16:34437589-34757071	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
22	esv2753593	chr16:34437589-34757071	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
23	esv2755187	chr16:34437589-34757071	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
24	esv2751568	chr16:34437589-34760999	Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
25	esv2751569	chr16:34437589-34760999	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
26	esv2751570	chr16:34437589-34760999	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
27	esv2751571	chr16:34437589-34790371	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
28	esv2751572	chr16:34437589-34790371	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
29	esv2751573	chr16:34437589-34790371	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
30	esv2751574	chr16:34437589-34790371	Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
31	esv2751575	chr16:34437589-34790434	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
32	nsv869815	chr16:34440019-34744817	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
33	nsv870396	chr16:34440019-34761527	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
34	nsv869801	chr16:34440019-34773553	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
35	esv2751578	chr16:34441795-34757071	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
36	esv2751579	chr16:34441795-34757071	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
37	esv2756573	chr16:34441795-34757071	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
38	esv2756659	chr16:34441795-34757071	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
39	esv2751580	chr16:34441795-34760967	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
40	nsv1062022	chr16:34441795-34765204	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
41	esv34829	chr16:34441795-34790371	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
42	nsv1066582	chr16:34444299-34757071	ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
43	nsv1056265	chr16:34447874-34757071	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
44	nsv1066668	chr16:34448199-34757071	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
45	nsv1055219	chr16:34448199-34768275	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
46	nsv1065747	chr16:34449596-34757071	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
47	esv2751581	chr16:34449700-34757071	ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
48	esv2751582	chr16:34449700-34757071	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
49	esv2751583	chr16:34449700-34757071	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
50	esv2751584	chr16:34449700-34757071	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:34740000-34741800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr16:34740000-34741800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
3	chr16:34740000-34742000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr16:34740000-34742000	Active TSS	Brain Anterior Caudate	brain
5	chr16:34740200-34741600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr16:34740200-34741800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr16:34740600-34741600	ZNF genes & repeats	Pancreas	Pancrea
8	chr16:34740800-34741800	Active TSS	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links