Variant report

Variant	rs28710336
Chromosome Location	chr14:105865731-105865732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105865269..105865769-chr17:41465714..41466370,3	Hela-S3	cervix:
2	chr14:105865501..105867902-chr14:105893531..105895602,2	K562	blood:
3	chr14:105865246..105866769-chr17:41464664..41466627,6	MCF-7	breast:
4	chr14:105766401..105768254-chr14:105864654..105866501,3	MCF-7	breast:
5	chr14:105864340..105865872-chr14:105932267..105934891,2	MCF-7	breast:
6	chr14:105863162..105866503-chr14:105955373..105958550,4	MCF-7	breast:
7	chr14:105863668..105866126-chr14:105933833..105938378,4	MCF-7	breast:
8	chr14:105865246..105867543-chr14:105880799..105882893,2	K562	blood:
9	chr14:105863746..105866749-chr17:41464656..41467780,5	K562	blood:
10	chr14:105778405..105782273-chr14:105864844..105868439,3	K562	blood:
11	chr14:105863414..105866995-chr14:105913665..105917421,4	MCF-7	breast:
12	chr14:105864789..105866862-chr14:105990673..105993013,2	MCF-7	breast:
13	chr14:105839406..105843538-chr14:105863279..105866861,6	MCF-7	breast:
14	chr14:105862822..105868581-chr14:105954164..105958464,7	MCF-7	breast:
15	chr14:105864938..105866746-chr17:41444959..41447910,2	MCF-7	breast:
16	chr14:105865246..105866749-chr17:41462137..41463638,2	MCF-7	breast:
17	chr14:105863766..105866769-chr17:41464654..41467729,6	MCF-7	breast:
18	chr14:105862050..105866153-chr14:105956114..105958822,3	K562	blood:
19	chr14:105849372..105852249-chr14:105863098..105866090,2	K562	blood:
20	chr14:105861905..105865753-chr14:105884230..105887422,5	K562	blood:
21	chr14:105441981..105444790-chr14:105863308..105866164,2	MCF-7	breast:
22	chr14:105863749..105866749-chr3:73158573..73161478,4	K562	blood:
23	chr14:105846425..105848657-chr14:105864839..105866892,2	MCF-7	breast:
24	chr14:105863746..105866766-chr17:41464694..41467780,6	K562	blood:
25	chr14:105861825..105867195-chr14:105938738..105943218,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185024	Chromatin interaction
ENSG00000184986	Chromatin interaction
ENSG00000257270	Chromatin interaction
ENSG00000223247	Chromatin interaction
ENSG00000182809	Chromatin interaction
ENSG00000251602	Chromatin interaction
ENSG00000185567	Chromatin interaction
ENSG00000213145	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000257341	Chromatin interaction
ENSG00000242085	Chromatin interaction
ENSG00000182979	Chromatin interaction
ENSG00000179364	Chromatin interaction
ENSG00000185347	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10132193	1.00[AMR][1000 genomes]
rs10133343	0.82[ASW][hapmap];1.00[AMR][1000 genomes]
rs10133666	1.00[AMR][1000 genomes]
rs10134069	0.89[ASW][hapmap]
rs10136894	1.00[AMR][1000 genomes]
rs10137499	1.00[AMR][1000 genomes]
rs10142763	1.00[AMR][1000 genomes]
rs10150076	1.00[AMR][1000 genomes]
rs10151345	1.00[AMR][1000 genomes]
rs10152000	1.00[AMR][1000 genomes]
rs11847920	0.82[ASW][hapmap];1.00[AMR][1000 genomes]
rs11850681	1.00[AMR][1000 genomes]
rs11850746	1.00[AMR][1000 genomes]
rs28406946	1.00[AMR][1000 genomes]
rs28419155	1.00[AMR][1000 genomes]
rs28451686	1.00[AMR][1000 genomes]
rs28482150	1.00[AMR][1000 genomes]
rs28507499	1.00[AMR][1000 genomes]
rs28537945	1.00[AMR][1000 genomes]
rs28539444	1.00[AMR][1000 genomes]
rs28545230	1.00[AMR][1000 genomes]
rs28547922	1.00[AMR][1000 genomes]
rs28588179	1.00[AMR][1000 genomes]
rs28665678	1.00[AMR][1000 genomes]
rs28678078	1.00[AMR][1000 genomes]
rs28678492	1.00[AMR][1000 genomes]
rs28733380	1.00[AMR][1000 genomes]
rs4073351	1.00[AMR][1000 genomes]
rs4073352	1.00[AMR][1000 genomes]
rs56734561	1.00[AMR][1000 genomes]
rs61326617	1.00[AMR][1000 genomes]
rs7158718	1.00[AMR][1000 genomes]
rs73361045	1.00[AMR][1000 genomes]
rs8009536	1.00[AMR][1000 genomes]
rs8009750	1.00[AMR][1000 genomes]
rs9743768	1.00[AMR][1000 genomes]
rs9989145	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105863800-105866800	Enhancers	Fetal Brain Male	brain
2	chr14:105864000-105866400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr14:105864200-105865800	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr14:105864400-105865800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:105864400-105865800	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr14:105864400-105865800	Active TSS	K562	blood
7	chr14:105864400-105866000	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr14:105864400-105866000	Active TSS	HSMMtube	muscle
9	chr14:105864600-105865800	Active TSS	GM12878-XiMat	blood
10	chr14:105864600-105865800	Active TSS	HepG2	liver
11	chr14:105864600-105866200	Active TSS	NHEK	skin
12	chr14:105865000-105865800	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr14:105865000-105865800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
14	chr14:105865000-105865800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
15	chr14:105865000-105865800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr14:105865000-105866000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
17	chr14:105865000-105867000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr14:105865000-105868400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:105865200-105865800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:105865200-105865800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr14:105865200-105865800	Flanking Active TSS	Primary B cells from peripheral blood	blood
22	chr14:105865200-105865800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
23	chr14:105865200-105865800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr14:105865200-105865800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
25	chr14:105865200-105865800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
26	chr14:105865200-105865800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
27	chr14:105865200-105865800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr14:105865200-105865800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr14:105865200-105865800	Flanking Active TSS	Liver	Liver
30	chr14:105865200-105865800	Flanking Active TSS	Brain Hippocampus Middle	brain
31	chr14:105865200-105865800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
32	chr14:105865200-105865800	Flanking Active TSS	Placenta	Placenta
33	chr14:105865200-105865800	Flanking Active TSS	Stomach Mucosa	stomach
34	chr14:105865200-105865800	Flanking Active TSS	Spleen	Spleen
35	chr14:105865200-105865800	Flanking Active TSS	HMEC	breast
36	chr14:105865200-105865800	Flanking Active TSS	NH-A	brain
37	chr14:105865200-105866000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr14:105865200-105866000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
39	chr14:105865200-105866000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr14:105865200-105866000	Flanking Active TSS	Brain Germinal Matrix	brain
41	chr14:105865200-105866000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr14:105865200-105866000	Flanking Active TSS	Fetal Lung	lung
43	chr14:105865200-105866000	Flanking Active TSS	Fetal Muscle Trunk	muscle
44	chr14:105865200-105866000	Flanking Active TSS	Fetal Thymus	thymus
45	chr14:105865200-105866000	Flanking Active TSS	Lung	lung
46	chr14:105865200-105866000	Flanking Active TSS	Pancreas	Pancrea
47	chr14:105865200-105866000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
48	chr14:105865200-105866000	Flanking Active TSS	Stomach Smooth Muscle	stomach
49	chr14:105865200-105866000	Flanking Active TSS	HUVEC	blood vessel
50	chr14:105865200-105866200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood

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