Variant report

Variant	rs9989145
Chromosome Location	chr14:105866582-105866583
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105865501..105867902-chr14:105893531..105895602,2	K562	blood:
2	chr14:105865246..105866769-chr17:41464664..41466627,6	MCF-7	breast:
3	chr14:105865246..105867543-chr14:105880799..105882893,2	K562	blood:
4	chr14:105863746..105866749-chr17:41464656..41467780,5	K562	blood:
5	chr14:105778405..105782273-chr14:105864844..105868439,3	K562	blood:
6	chr14:105863414..105866995-chr14:105913665..105917421,4	MCF-7	breast:
7	chr14:105864789..105866862-chr14:105990673..105993013,2	MCF-7	breast:
8	chr14:105839406..105843538-chr14:105863279..105866861,6	MCF-7	breast:
9	chr14:105862822..105868581-chr14:105954164..105958464,7	MCF-7	breast:
10	chr14:105864938..105866746-chr17:41444959..41447910,2	MCF-7	breast:
11	chr14:105865246..105866749-chr17:41462137..41463638,2	MCF-7	breast:
12	chr14:105863766..105866769-chr17:41464654..41467729,6	MCF-7	breast:
13	chr14:105865997..105868726-chr14:105883403..105885353,2	K562	blood:
14	chr14:105863749..105866749-chr3:73158573..73161478,4	K562	blood:
15	chr14:105846425..105848657-chr14:105864839..105866892,2	MCF-7	breast:
16	chr14:105863746..105866766-chr17:41464694..41467780,6	K562	blood:
17	chr14:105861825..105867195-chr14:105938738..105943218,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000223247	Chromatin interaction
ENSG00000257341	Chromatin interaction
ENSG00000184986	Chromatin interaction
ENSG00000185347	Chromatin interaction
ENSG00000179364	Chromatin interaction
ENSG00000182979	Chromatin interaction
ENSG00000242085	Chromatin interaction
ENSG00000213145	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000185024	Chromatin interaction
ENSG00000182809	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10132193	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10133343	1.00[AMR][1000 genomes]
rs10133666	1.00[AMR][1000 genomes]
rs10136894	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10137499	1.00[AMR][1000 genomes]
rs10142763	1.00[AMR][1000 genomes]
rs10150076	1.00[AMR][1000 genomes]
rs10151345	0.84[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10152000	1.00[AMR][1000 genomes]
rs11847920	1.00[AMR][1000 genomes]
rs11850681	1.00[AMR][1000 genomes]
rs11850746	1.00[AMR][1000 genomes]
rs28406946	1.00[AMR][1000 genomes]
rs28419155	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28451686	1.00[AMR][1000 genomes]
rs28482150	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28507499	1.00[AMR][1000 genomes]
rs28537945	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28539444	1.00[AMR][1000 genomes]
rs28545230	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28547922	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28588179	1.00[AMR][1000 genomes]
rs28665678	1.00[AMR][1000 genomes]
rs28678078	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28678492	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28710336	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28733380	1.00[AMR][1000 genomes]
rs4073351	1.00[AMR][1000 genomes]
rs4073352	1.00[AMR][1000 genomes]
rs56734561	1.00[AMR][1000 genomes]
rs61326617	1.00[AMR][1000 genomes]
rs7158718	1.00[AMR][1000 genomes]
rs73361045	1.00[AMR][1000 genomes]
rs73361068	0.89[AFR][1000 genomes]
rs8009536	0.83[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8009750	1.00[AMR][1000 genomes]
rs9743768	0.83[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105863800-105866800	Enhancers	Fetal Brain Male	brain
2	chr14:105865000-105867000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:105865000-105868400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:105865200-105866600	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
5	chr14:105865200-105867000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:105865200-105867000	Transcr. at gene 5' and 3'	Dnd41	blood
7	chr14:105865200-105867600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
8	chr14:105865200-105867600	ZNF genes & repeats	Fetal Intestine Large	intestine
9	chr14:105865200-105867800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:105865200-105868400	ZNF genes & repeats	Fetal Intestine Small	intestine
11	chr14:105865200-105868600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
12	chr14:105865200-105868600	ZNF genes & repeats	Fetal Stomach	stomach
13	chr14:105865400-105867600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
14	chr14:105865400-105867600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
15	chr14:105865600-105866600	Flanking Active TSS	Hela-S3	cervix
16	chr14:105865600-105867000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:105865600-105867600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:105865600-105867800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr14:105865600-105867800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr14:105865600-105867800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr14:105865600-105868400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
22	chr14:105865600-105875000	Weak transcription	Fetal Kidney	kidney
23	chr14:105865800-105866600	Enhancers	Primary B cells from peripheral blood	blood
24	chr14:105865800-105866600	Enhancers	Primary T cells fromperipheralblood	blood
25	chr14:105865800-105866600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr14:105865800-105866600	Transcr. at gene 5' and 3'	Fetal Brain Female	brain
27	chr14:105865800-105866600	Enhancers	Stomach Mucosa	stomach
28	chr14:105865800-105866600	Flanking Active TSS	HepG2	liver
29	chr14:105865800-105866800	Enhancers	Primary B cells from cord blood	blood
30	chr14:105865800-105866800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr14:105865800-105866800	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr14:105865800-105866800	Genic enhancers	Gastric	stomach
33	chr14:105865800-105867000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr14:105865800-105867600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
35	chr14:105865800-105867600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
36	chr14:105865800-105867600	ZNF genes & repeats	Placenta	Placenta
37	chr14:105865800-105867800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
38	chr14:105865800-105867800	ZNF genes & repeats	A549	lung
39	chr14:105865800-105868400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:105865800-105868800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr14:105865800-105869400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr14:105866000-105866600	Enhancers	Brain Angular Gyrus	brain
43	chr14:105866000-105866600	Enhancers	Brain Cingulate Gyrus	brain
44	chr14:105866000-105866600	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr14:105866000-105866600	Enhancers	Brain Substantia Nigra	brain
46	chr14:105866000-105866600	Enhancers	Lung	lung
47	chr14:105866000-105866600	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr14:105866000-105866800	Genic enhancers	Fetal Muscle Trunk	muscle
49	chr14:105866000-105866800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr14:105866000-105867000	Genic enhancers	Brain Germinal Matrix	brain

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