Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1181981	0.95[JPT][hapmap]
rs1181984	0.95[JPT][hapmap]
rs1181987	0.95[JPT][hapmap]
rs1181988	0.95[JPT][hapmap]
rs1181989	0.95[JPT][hapmap]
rs1181990	0.95[JPT][hapmap]
rs12653731	0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12657219	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17699243	0.95[JPT][hapmap]
rs17699303	0.95[JPT][hapmap]
rs181958	0.95[JPT][hapmap]
rs2108972	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs257907	0.95[JPT][hapmap]
rs257998	0.95[JPT][hapmap]
rs258005	0.95[JPT][hapmap]
rs258007	0.90[JPT][hapmap]
rs3932768	0.95[JPT][hapmap]
rs51668	0.90[JPT][hapmap]
rs58038005	0.96[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61348502	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6859755	0.80[JPT][hapmap]
rs719570	0.92[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72663365	0.92[AMR][1000 genomes]
rs759139	0.95[JPT][hapmap]
rs759140	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3392548	chr5:128139102-128159002	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128151200-128157400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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