Variant report

Variant	rs28722581
Chromosome Location	chr7:38939587-38939588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38938879..38942255-chr7:38943779..38948503,4	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10239557	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10242978	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10259755	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10266891	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10272767	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1229011	0.95[AFR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2190666	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2240555	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2392609	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2893567	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35995292	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4720308	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56098802	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7803397	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9638944	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830967	chr7:38913837-39069253	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38886200-38947800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:38889400-38948200	Weak transcription	Gastric	stomach
3	chr7:38903800-38939600	Weak transcription	A549	lung
4	chr7:38903800-38947000	Weak transcription	Small Intestine	intestine
5	chr7:38906000-38947800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:38908000-38941000	Weak transcription	Colon Smooth Muscle	Colon
7	chr7:38908800-38943000	Weak transcription	Esophagus	oesophagus
8	chr7:38908800-38947800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:38908800-38948000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr7:38909000-38947800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:38911800-38948200	Weak transcription	Aorta	Aorta
12	chr7:38916600-38941600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr7:38916800-38948200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr7:38918800-38948000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr7:38919400-38942200	Weak transcription	Pancreas	Pancrea
16	chr7:38920400-38940800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr7:38920800-38942400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:38921000-38946800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr7:38921800-38947800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:38925200-38947800	Weak transcription	HUVEC	blood vessel
21	chr7:38926400-38948000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:38926600-38941800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:38928000-38947400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr7:38928800-38942200	Weak transcription	NHDF-Ad	bronchial
25	chr7:38929200-38947800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr7:38930000-38947600	Weak transcription	NHLF	lung
27	chr7:38930200-38946800	Weak transcription	K562	blood
28	chr7:38930200-38947400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr7:38930200-38947400	Weak transcription	HSMM	muscle
30	chr7:38930200-38947600	Weak transcription	Fetal Kidney	kidney
31	chr7:38930200-38947800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr7:38931000-38945000	Weak transcription	Primary B cells from cord blood	blood
33	chr7:38931200-38947400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr7:38932200-38948000	Weak transcription	Psoas Muscle	Psoas
35	chr7:38932800-38948000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr7:38933000-38941800	Weak transcription	Lung	lung
37	chr7:38933000-38942200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr7:38933000-38947800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr7:38933000-38948200	Weak transcription	Spleen	Spleen
40	chr7:38933200-38942200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr7:38934000-38947800	Weak transcription	Brain Angular Gyrus	brain
42	chr7:38934200-38947600	Weak transcription	Fetal Brain Male	brain
43	chr7:38935800-38942200	Weak transcription	Left Ventricle	heart
44	chr7:38935800-38946800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr7:38935800-38947800	Weak transcription	Fetal Stomach	stomach
46	chr7:38935800-38948000	Weak transcription	Placenta	Placenta
47	chr7:38935800-38948000	Weak transcription	Ovary	ovary
48	chr7:38936000-38947400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr7:38936000-38947600	Weak transcription	Fetal Lung	lung
50	chr7:38936000-38947800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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