Variant report

Variant	rs10259755
Chromosome Location	chr7:38897012-38897013
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38893039..38894682-chr7:38896335..38898447,2	K562	blood:
2	chr7:38889563..38891670-chr7:38895298..38897406,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10239557	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10242978	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10266891	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10272767	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1229011	0.89[EUR][1000 genomes]
rs1859937	0.90[AFR][1000 genomes]
rs2190666	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2240555	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2392609	0.86[EUR][1000 genomes]
rs28722581	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2893567	0.97[AFR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35995292	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs3801135	0.85[AFR][1000 genomes]
rs4720308	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4723793	0.81[AFR][1000 genomes]
rs56098802	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7788664	0.85[AFR][1000 genomes]
rs7803397	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9638944	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032637	chr7:38832627-38902723	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv887966	chr7:38835035-38933942	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38835600-38900800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:38858600-38901600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr7:38858800-38907600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:38859800-38900800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr7:38860600-38900200	Weak transcription	Fetal Intestine Large	intestine
6	chr7:38867400-38905200	Weak transcription	Left Ventricle	heart
7	chr7:38871400-38905800	Weak transcription	Aorta	Aorta
8	chr7:38871400-38920000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:38871600-38906000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr7:38873000-38907600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr7:38873200-38919200	Weak transcription	Pancreas	Pancrea
12	chr7:38875800-38897400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:38876400-38906200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr7:38877200-38900800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr7:38877200-38901200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr7:38879800-38938000	Weak transcription	Right Ventricle	heart
17	chr7:38880200-38897600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:38880600-38900600	Weak transcription	Adipose Nuclei	Adipose
19	chr7:38880800-38905600	Weak transcription	Fetal Muscle Leg	muscle
20	chr7:38881200-38898000	Weak transcription	HSMMtube	muscle
21	chr7:38881200-38898000	Weak transcription	NHLF	lung
22	chr7:38881200-38900000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr7:38881200-38907600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr7:38881200-38919200	Weak transcription	Psoas Muscle	Psoas
25	chr7:38881400-38898000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr7:38883400-38907600	Weak transcription	Esophagus	oesophagus
27	chr7:38884600-38905600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr7:38885000-38900800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr7:38885800-38897200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr7:38886200-38901400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:38886200-38947800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr7:38886400-38898000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr7:38886400-38907400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr7:38886400-38907400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr7:38886400-38907600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr7:38886600-38901200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr7:38886600-38907200	Weak transcription	Colon Smooth Muscle	Colon
38	chr7:38886800-38897600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr7:38886800-38898000	Weak transcription	Brain Substantia Nigra	brain
40	chr7:38887200-38899800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr7:38887200-38906600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr7:38887200-38907400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr7:38887600-38902800	Weak transcription	Liver	Liver
44	chr7:38889200-38903000	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr7:38889200-38907200	Weak transcription	Ovary	ovary
46	chr7:38889400-38898000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr7:38889400-38899600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr7:38889400-38900800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr7:38889400-38900800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr7:38889400-38906800	Weak transcription	Fetal Stomach	stomach

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