Variant report

Variant	rs2392609
Chromosome Location	chr7:38952595-38952596
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10239557	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10242978	0.85[EUR][1000 genomes]
rs10259755	0.86[EUR][1000 genomes]
rs10266891	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10272767	0.85[EUR][1000 genomes]
rs1229011	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12532461	0.84[JPT][hapmap]
rs1473137	0.86[JPT][hapmap]
rs1859937	0.88[YRI][hapmap]
rs2190666	0.88[CEU][hapmap];0.91[CHB][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2240555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2286095	0.84[CHB][hapmap]
rs28722581	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2893567	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.86[EUR][1000 genomes]
rs35995292	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3801135	0.81[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap]
rs4430003	0.86[JPT][hapmap]
rs4720308	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4723793	0.86[JPT][hapmap];0.87[YRI][hapmap]
rs56098802	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7785161	0.82[JPT][hapmap]
rs7788664	0.80[JPT][hapmap];0.81[YRI][hapmap]
rs7803397	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.86[EUR][1000 genomes]
rs9638944	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830967	chr7:38913837-39069253	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38949000-38953000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:38952200-38952600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:38952200-38953200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr7:38952200-38953400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:38952400-38953000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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