Variant report

Variant	rs7785161
Chromosome Location	chr7:38862911-38862912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38862474..38864666-chr7:38869704..38871637,2	K562	blood:
2	chr7:38857572..38859924-chr7:38860336..38863164,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000006715	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12532461	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1473137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1859937	0.83[CHB][hapmap];0.83[JPT][hapmap];0.94[ASN][1000 genomes]
rs2074656	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs2190666	0.82[CHB][hapmap]
rs2240350	0.81[CHB][hapmap]
rs2240352	0.82[JPT][hapmap]
rs2240355	0.86[CHB][hapmap]
rs2240555	0.81[JPT][hapmap]
rs2286081	0.86[CHB][hapmap]
rs2286095	0.84[CHB][hapmap]
rs2286097	0.85[CHB][hapmap]
rs2286099	0.86[CHB][hapmap]
rs2392609	0.82[JPT][hapmap]
rs2893567	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs3779126	0.86[CHB][hapmap]
rs3801135	0.91[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs3801139	0.82[JPT][hapmap]
rs3801140	0.82[JPT][hapmap]
rs4430003	0.91[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4723793	0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs6462862	0.86[CHB][hapmap]
rs6961672	0.86[CHB][hapmap]
rs7788664	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7803397	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs886646	0.81[CHB][hapmap]
rs9638944	0.82[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032637	chr7:38832627-38902723	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv887966	chr7:38835035-38933942	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38829400-38864400	Weak transcription	Thymus	Thymus
2	chr7:38829400-38864600	Weak transcription	NHLF	lung
3	chr7:38831000-38871200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr7:38831800-38867800	Weak transcription	Fetal Thymus	thymus
5	chr7:38834400-38863400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:38835200-38865200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:38835600-38900800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:38839800-38871000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:38842000-38865400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:38847400-38869800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:38847800-38866800	Weak transcription	Brain Substantia Nigra	brain
12	chr7:38850200-38865400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:38850600-38869600	Weak transcription	Stomach Mucosa	stomach
14	chr7:38851600-38867000	Weak transcription	Gastric	stomach
15	chr7:38853000-38863600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:38854000-38870400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:38855400-38865400	Weak transcription	Osteobl	bone
18	chr7:38855600-38863200	Strong transcription	Primary B cells from cord blood	blood
19	chr7:38855600-38871000	Weak transcription	HepG2	liver
20	chr7:38856000-38865200	Weak transcription	NHDF-Ad	bronchial
21	chr7:38856000-38871000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr7:38856200-38865400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr7:38856200-38871200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr7:38856800-38865000	Weak transcription	GM12878-XiMat	blood
25	chr7:38856800-38865400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr7:38857200-38863600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr7:38857200-38867200	Weak transcription	Esophagus	oesophagus
28	chr7:38857600-38863600	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr7:38857600-38865200	Weak transcription	Placenta	Placenta
30	chr7:38857600-38865800	Weak transcription	HSMMtube	muscle
31	chr7:38857600-38871800	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr7:38857800-38863600	Weak transcription	Fetal Lung	lung
33	chr7:38857800-38865000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr7:38857800-38865200	Weak transcription	Colon Smooth Muscle	Colon
35	chr7:38858000-38865600	Weak transcription	Liver	Liver
36	chr7:38858000-38870600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr7:38858200-38864400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr7:38858200-38865200	Weak transcription	Ovary	ovary
39	chr7:38858200-38867000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr7:38858200-38868600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr7:38858400-38865400	Weak transcription	Left Ventricle	heart
42	chr7:38858400-38871800	Weak transcription	Lung	lung
43	chr7:38858600-38901600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr7:38858800-38865000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr7:38858800-38865200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr7:38858800-38907600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr7:38859000-38865200	Weak transcription	Psoas Muscle	Psoas
48	chr7:38859000-38865400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr7:38859000-38872800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr7:38859000-38895200	Weak transcription	Rectal Mucosa Donor 31	rectum

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