Variant report

Variant	rs2286081
Chromosome Location	chr7:38817847-38817848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:38817599-38817972	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
VPS41	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10232480	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11978728	0.82[ASN][1000 genomes]
rs12532461	0.84[CHB][hapmap]
rs12538785	0.94[ASN][1000 genomes]
rs12701660	0.85[ASN][1000 genomes]
rs13228699	0.86[YRI][hapmap]
rs13244313	0.83[ASN][1000 genomes]
rs1473137	0.85[CHB][hapmap]
rs1859937	0.87[EUR][1000 genomes]
rs1978170	0.84[ASN][1000 genomes]
rs2074656	0.85[CEU][hapmap];0.91[CHB][hapmap];0.96[JPT][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2240350	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2240355	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2240555	0.80[CHB][hapmap]
rs2286083	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2286085	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2286086	0.82[CHB][hapmap]
rs2286090	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2286092	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2286095	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2286097	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2286099	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2286100	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2286102	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2392595	0.82[ASN][1000 genomes]
rs2893567	0.85[CHB][hapmap]
rs3207255	0.85[ASN][1000 genomes]
rs3779126	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3801135	0.85[CEU][hapmap];0.95[CHB][hapmap];0.92[EUR][1000 genomes]
rs3801142	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3801144	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4430003	0.86[CHB][hapmap]
rs4720298	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4720299	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4723783	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4723793	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[EUR][1000 genomes]
rs6462858	0.82[ASN][1000 genomes]
rs6462859	0.84[ASN][1000 genomes]
rs6462861	0.84[ASN][1000 genomes]
rs6462862	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6961672	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7785161	0.86[CHB][hapmap]
rs7788664	0.81[CEU][hapmap];0.85[CHB][hapmap];0.88[EUR][1000 genomes]
rs7803397	0.85[CHB][hapmap]
rs886646	0.85[CHB][hapmap]
rs9638944	0.86[CHB][hapmap]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38757200-38835400	Weak transcription	Psoas Muscle	Psoas
2	chr7:38761000-38820400	Weak transcription	Stomach Mucosa	stomach
3	chr7:38763200-38828000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:38763400-38828800	Weak transcription	HepG2	liver
5	chr7:38780800-38828800	Weak transcription	Gastric	stomach
6	chr7:38784800-38835000	Weak transcription	NHEK	skin
7	chr7:38785600-38834600	Weak transcription	HMEC	breast
8	chr7:38785600-38835000	Weak transcription	NH-A	brain
9	chr7:38787000-38827400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr7:38789000-38818800	Strong transcription	Primary B cells from peripheral blood	blood
11	chr7:38792200-38828000	Weak transcription	Colon Smooth Muscle	Colon
12	chr7:38792400-38821800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr7:38793200-38818200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:38793400-38828600	Weak transcription	Small Intestine	intestine
15	chr7:38793400-38861200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:38793600-38832600	Weak transcription	Brain Angular Gyrus	brain
17	chr7:38798200-38828800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:38800200-38837600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:38801000-38818400	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr7:38803200-38845400	Weak transcription	Colonic Mucosa	Colon
21	chr7:38803200-38846000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr7:38804400-38836200	Weak transcription	Fetal Brain Male	brain
23	chr7:38806200-38827200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr7:38806200-38828800	Weak transcription	Pancreas	Pancrea
25	chr7:38806400-38827600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr7:38806600-38828800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr7:38806800-38821600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:38806800-38828400	Weak transcription	Fetal Lung	lung
29	chr7:38806800-38828800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:38806800-38828800	Weak transcription	Brain Substantia Nigra	brain
31	chr7:38806800-38828800	Weak transcription	Esophagus	oesophagus
32	chr7:38806800-38828800	Weak transcription	Thymus	Thymus
33	chr7:38806800-38828800	Weak transcription	Spleen	Spleen
34	chr7:38806800-38832800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:38809000-38827600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr7:38809200-38828600	Weak transcription	Brain Anterior Caudate	brain
37	chr7:38809400-38821600	Weak transcription	Fetal Intestine Small	intestine
38	chr7:38809600-38822400	Weak transcription	Fetal Stomach	stomach
39	chr7:38811000-38818600	Strong transcription	Primary B cells from cord blood	blood
40	chr7:38811600-38818600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr7:38812600-38831400	Weak transcription	A549	lung
42	chr7:38812800-38825600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr7:38812800-38834800	Weak transcription	HSMMtube	muscle
44	chr7:38813000-38819800	Weak transcription	Lung	lung
45	chr7:38813000-38828800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr7:38813600-38821800	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr7:38813600-38822400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr7:38813600-38827600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr7:38813600-38828800	Weak transcription	Fetal Muscle Trunk	muscle
50	chr7:38813800-38821400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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