Variant report

Variant	rs2240350
Chromosome Location	chr7:38796570-38796571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38795817..38798260-chr7:38798737..38800298,2	K562	blood:
2	chr7:38795817..38798538-chr7:38798737..38800643,4	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10232480	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11978728	0.85[ASN][1000 genomes]
rs12532461	0.80[CHB][hapmap];0.83[CHD][hapmap]
rs12538785	0.98[ASN][1000 genomes]
rs12701660	0.88[ASN][1000 genomes]
rs13244313	0.86[ASN][1000 genomes]
rs1473137	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs1978170	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2074656	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2240355	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2286081	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2286083	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286085	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286090	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2286092	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2286095	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2286097	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2286099	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2286100	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2286102	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2392595	0.85[ASN][1000 genomes]
rs2893567	0.81[CHB][hapmap]
rs3207255	0.88[ASN][1000 genomes]
rs3779126	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3801135	0.85[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.81[TSI][hapmap]
rs3801142	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3801144	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4430003	0.81[CHB][hapmap]
rs4720298	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4720299	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4723783	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4723793	0.85[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];0.83[EUR][1000 genomes]
rs6462858	0.85[ASN][1000 genomes]
rs6462859	0.87[ASN][1000 genomes]
rs6462861	0.87[ASN][1000 genomes]
rs6462862	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6961672	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7785056	0.81[ASN][1000 genomes]
rs7785161	0.81[CHB][hapmap]
rs7788664	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs7794371	0.80[ASN][1000 genomes]
rs7803397	0.81[CHB][hapmap];0.81[CHD][hapmap]
rs9638944	0.81[CHB][hapmap]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38749000-38803600	Weak transcription	Fetal Brain Male	brain
2	chr7:38757200-38835400	Weak transcription	Psoas Muscle	Psoas
3	chr7:38759200-38810200	Weak transcription	A549	lung
4	chr7:38759400-38810600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:38760000-38799800	Weak transcription	HUVEC	blood vessel
6	chr7:38760600-38800200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr7:38761000-38820400	Weak transcription	Stomach Mucosa	stomach
8	chr7:38763200-38828000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr7:38763400-38828800	Weak transcription	HepG2	liver
10	chr7:38765400-38802800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:38767200-38802800	Weak transcription	Right Ventricle	heart
12	chr7:38767200-38805800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:38774800-38816800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:38775800-38816600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr7:38777400-38800400	Strong transcription	Primary B cells from cord blood	blood
16	chr7:38780800-38803600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr7:38780800-38806000	Weak transcription	Fetal Brain Female	brain
18	chr7:38780800-38828800	Weak transcription	Gastric	stomach
19	chr7:38781400-38805800	Weak transcription	Brain Substantia Nigra	brain
20	chr7:38784400-38805800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr7:38784600-38805800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:38784800-38835000	Weak transcription	NHEK	skin
23	chr7:38785000-38815800	Weak transcription	NHLF	lung
24	chr7:38785600-38834600	Weak transcription	HMEC	breast
25	chr7:38785600-38835000	Weak transcription	NH-A	brain
26	chr7:38786600-38805800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr7:38786600-38805800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:38786600-38806000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr7:38787000-38827400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr7:38787200-38797000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr7:38789000-38797400	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr7:38789000-38800000	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr7:38789000-38818800	Strong transcription	Primary B cells from peripheral blood	blood
34	chr7:38789200-38800000	Strong transcription	Fetal Intestine Large	intestine
35	chr7:38789400-38799600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr7:38789600-38797800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:38789600-38798000	Strong transcription	Primary hematopoietic stem cells	blood
38	chr7:38789600-38799600	Strong transcription	Adipose Nuclei	Adipose
39	chr7:38789600-38800000	Strong transcription	Liver	Liver
40	chr7:38789600-38800200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:38789600-38811000	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr7:38789600-38816800	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr7:38790200-38799200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr7:38790200-38800000	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr7:38790800-38799400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr7:38791200-38802600	Weak transcription	Brain Anterior Caudate	brain
47	chr7:38791400-38812600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr7:38791600-38801600	Weak transcription	HSMM	muscle
49	chr7:38791800-38801600	Weak transcription	NHDF-Ad	bronchial
50	chr7:38791800-38813400	Weak transcription	Osteobl	bone

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