Variant report

Variant	rs6462859
Chromosome Location	chr7:38752705-38752706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10232480	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10243338	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10951570	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10951571	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11978728	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12538785	0.88[ASN][1000 genomes]
rs12701655	0.83[AMR][1000 genomes]
rs12701660	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13244313	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1978170	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2240350	0.87[ASN][1000 genomes]
rs2240355	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2286081	0.84[ASN][1000 genomes]
rs2286083	0.87[ASN][1000 genomes]
rs2286085	0.87[ASN][1000 genomes]
rs2286090	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2286092	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2286095	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2286097	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2286099	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2286100	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2286102	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2392595	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3207255	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35627687	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3779126	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3801142	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3801144	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4720298	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4720299	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4723783	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6462858	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6462861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6462862	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6961672	0.86[ASN][1000 genomes]
rs6968515	0.80[AMR][1000 genomes]
rs6968660	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6968720	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6968795	0.83[AMR][1000 genomes]
rs6969119	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7785056	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7794371	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7806860	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7811599	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38748800-38756200	Weak transcription	Fetal Brain Female	brain
2	chr7:38749000-38803600	Weak transcription	Fetal Brain Male	brain
3	chr7:38751400-38753200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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