Variant report

Variant	rs6968795
Chromosome Location	chr7:38741224-38741225
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38740549..38744081-chr7:38747124..38750067,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-POU6F2-3	chr7:38741067-38741258	NONHSAT120189

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10227687	0.95[ASN][1000 genomes]
rs10243338	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10951570	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10951571	0.82[AMR][1000 genomes]
rs11772698	0.82[AMR][1000 genomes]
rs11978728	0.82[AMR][1000 genomes]
rs12667567	0.84[ASN][1000 genomes]
rs12701654	0.94[ASN][1000 genomes]
rs12701655	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1978171	0.80[ASN][1000 genomes]
rs1978172	0.80[ASN][1000 genomes]
rs2392595	0.84[AMR][1000 genomes]
rs35627687	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6462858	0.84[AMR][1000 genomes]
rs6462859	0.83[AMR][1000 genomes]
rs6462861	0.83[AMR][1000 genomes]
rs6964269	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6968515	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6968660	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6968720	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6969119	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7778570	0.80[ASN][1000 genomes]
rs7779329	0.80[ASN][1000 genomes]
rs7794371	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7806860	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7810938	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7811599	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9692361	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38739600-38743400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:38739600-38743600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:38740600-38743800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:38740800-38742800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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