Variant report

Variant	rs9692361
Chromosome Location	chr7:38738905-38738906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38737792..38739807-chr7:38743748..38746475,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10227687	0.81[ASN][1000 genomes]
rs10247503	0.80[JPT][hapmap]
rs11772698	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11980087	0.81[CEU][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12333500	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12672793	0.81[JPT][hapmap]
rs12701652	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs12701654	0.81[ASN][1000 genomes]
rs12701655	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1468348	0.86[JPT][hapmap]
rs17700142	0.81[JPT][hapmap]
rs17700172	0.86[JPT][hapmap]
rs17767818	0.81[JPT][hapmap]
rs1859937	0.81[JPT][hapmap]
rs1864886	1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.94[ASN][1000 genomes]
rs2074657	0.81[JPT][hapmap]
rs2240351	0.81[JPT][hapmap]
rs2240352	0.85[JPT][hapmap]
rs2286106	0.85[JPT][hapmap]
rs2286109	0.81[JPT][hapmap]
rs35627687	0.80[AFR][1000 genomes]
rs3801139	0.85[JPT][hapmap]
rs3801140	0.85[JPT][hapmap]
rs3801143	0.81[JPT][hapmap]
rs3801145	0.81[JPT][hapmap]
rs6964269	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6968515	0.81[ASN][1000 genomes]
rs6968660	0.81[ASN][1000 genomes]
rs6968720	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6968795	0.80[AMR][1000 genomes]
rs6969119	0.81[ASN][1000 genomes]
rs733150	0.81[JPT][hapmap]
rs7783695	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7785911	0.81[JPT][hapmap]
rs7795874	0.81[JPT][hapmap]
rs7810938	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9692361	CDK2AP1	trans	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38738600-38739600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:38738600-38740600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:38738600-38740600	Enhancers	NHDF-Ad	bronchial
4	chr7:38738800-38739200	Enhancers	Fetal Muscle Leg	muscle
5	chr7:38738800-38739600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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