Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10247503	0.80[JPT][hapmap]
rs11772698	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11980087	0.81[CEU][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12333500	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12672793	0.81[JPT][hapmap]
rs12701652	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs1468348	0.86[JPT][hapmap]
rs17700142	0.81[JPT][hapmap]
rs17700172	0.86[JPT][hapmap]
rs17767818	0.81[JPT][hapmap]
rs1859937	0.81[JPT][hapmap]
rs1864886	1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2074657	0.81[JPT][hapmap]
rs2240351	0.81[JPT][hapmap]
rs2240352	0.85[JPT][hapmap]
rs2286106	0.85[JPT][hapmap]
rs2286109	0.81[JPT][hapmap]
rs3801139	0.85[JPT][hapmap]
rs3801140	0.85[JPT][hapmap]
rs3801143	0.81[JPT][hapmap]
rs3801145	0.81[JPT][hapmap]
rs6964269	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs733150	0.81[JPT][hapmap]
rs7785911	0.81[JPT][hapmap]
rs7795874	0.81[JPT][hapmap]
rs7810938	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9692361	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7783695	CDK2AP1	trans	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38722200-38733800	Weak transcription	Right Atrium	heart
2	chr7:38727000-38727400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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