Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10486677	0.80[JPT][hapmap]
rs10486678	0.80[JPT][hapmap]
rs11772698	0.93[ASN][1000 genomes]
rs12333500	0.94[ASN][1000 genomes]
rs12672793	0.85[JPT][hapmap]
rs12701651	0.84[GIH][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs1468348	0.80[JPT][hapmap]
rs17700142	0.85[JPT][hapmap]
rs17700172	0.80[JPT][hapmap]
rs17700262	0.80[JPT][hapmap]
rs17767818	0.85[JPT][hapmap]
rs17768153	0.80[JPT][hapmap]
rs1864886	1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs2074655	0.80[JPT][hapmap]
rs2074657	0.85[JPT][hapmap]
rs2189855	0.80[JPT][hapmap]
rs2240352	0.80[JPT][hapmap]
rs2240353	0.80[JPT][hapmap]
rs2286088	0.80[JPT][hapmap]
rs2286098	0.80[JPT][hapmap]
rs2286105	0.80[JPT][hapmap]
rs2286109	0.85[JPT][hapmap]
rs3801139	0.80[JPT][hapmap]
rs3801140	0.80[JPT][hapmap]
rs7783695	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs9692361	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12701652	EEPD1	cis	cerebellum	SCAN
rs12701652	AAA1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38722200-38733800	Weak transcription	Right Atrium	heart

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