Variant report

Variant	rs6964269
Chromosome Location	chr7:38740878-38740879
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38740549..38744081-chr7:38747124..38750067,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-POU6F2-3	chr7:38740269-38740963	NONHSAT120189

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10227687	0.96[ASN][1000 genomes]
rs10243338	0.83[EUR][1000 genomes]
rs10247503	0.85[JPT][hapmap]
rs10486677	0.81[JPT][hapmap]
rs10486678	0.85[JPT][hapmap]
rs10951570	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11772698	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12333500	0.82[ASN][1000 genomes]
rs12667567	0.85[ASN][1000 genomes]
rs12672793	0.85[JPT][hapmap]
rs12672885	0.81[JPT][hapmap]
rs12674115	0.81[JPT][hapmap]
rs12701652	0.85[JPT][hapmap]
rs12701654	0.96[ASN][1000 genomes]
rs12701655	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1468348	0.95[JPT][hapmap]
rs17700142	0.90[JPT][hapmap]
rs17700172	0.95[JPT][hapmap]
rs17700262	0.81[JPT][hapmap]
rs17700752	0.83[JPT][hapmap]
rs17767818	0.90[JPT][hapmap]
rs17768153	0.85[JPT][hapmap]
rs17768711	0.83[CHB][hapmap]
rs1859937	0.91[JPT][hapmap]
rs1864886	0.83[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs2074655	0.85[JPT][hapmap]
rs2074657	0.90[JPT][hapmap]
rs2189855	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs2240351	0.86[JPT][hapmap]
rs2240352	0.95[JPT][hapmap]
rs2240353	0.85[JPT][hapmap]
rs2286086	0.84[JPT][hapmap]
rs2286088	0.81[JPT][hapmap]
rs2286098	0.81[JPT][hapmap]
rs2286105	0.85[JPT][hapmap]
rs2286106	0.90[JPT][hapmap]
rs2286109	0.90[JPT][hapmap]
rs2392598	0.84[JPT][hapmap]
rs34724372	0.81[JPT][hapmap]
rs35627687	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3735347	0.85[JPT][hapmap]
rs3801139	0.95[JPT][hapmap]
rs3801140	0.95[JPT][hapmap]
rs3801143	0.90[JPT][hapmap]
rs3801145	0.90[JPT][hapmap]
rs4723785	0.81[JPT][hapmap]
rs6968515	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6968660	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6968720	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6968795	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6969119	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs733150	0.86[JPT][hapmap]
rs7783695	0.92[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7785911	0.90[JPT][hapmap]
rs7794371	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7795874	0.90[JPT][hapmap]
rs7806860	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7810938	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7811599	0.84[AMR][1000 genomes]
rs886646	0.83[JPT][hapmap]
rs9692361	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38739600-38743400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:38739600-38743600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:38740600-38743800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:38740800-38742800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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