Variant report

Variant	rs7785056
Chromosome Location	chr7:38744891-38744892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38737792..38739807-chr7:38743748..38746475,2	K562	blood:
2	chr7:38744831..38747326-chr7:38766481..38768901,2	K562	blood:

Variant related genes	Relation type
ENSG00000006715	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10232480	0.82[ASN][1000 genomes]
rs10243338	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10951570	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10951571	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11978728	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12538785	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12701660	0.89[ASN][1000 genomes]
rs13244313	0.87[ASN][1000 genomes]
rs1978170	0.92[ASN][1000 genomes]
rs2240350	0.81[ASN][1000 genomes]
rs2240355	0.81[ASN][1000 genomes]
rs2286083	0.81[ASN][1000 genomes]
rs2286085	0.81[ASN][1000 genomes]
rs2286090	0.82[ASN][1000 genomes]
rs2286092	0.81[ASN][1000 genomes]
rs2286095	0.82[ASN][1000 genomes]
rs2286097	0.81[ASN][1000 genomes]
rs2286099	0.81[ASN][1000 genomes]
rs2286100	0.81[ASN][1000 genomes]
rs2286102	0.81[ASN][1000 genomes]
rs2392595	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3207255	0.89[ASN][1000 genomes]
rs3779126	0.82[ASN][1000 genomes]
rs3801142	0.81[ASN][1000 genomes]
rs3801144	0.82[ASN][1000 genomes]
rs4720298	0.81[ASN][1000 genomes]
rs4720299	0.81[ASN][1000 genomes]
rs4723783	0.81[ASN][1000 genomes]
rs6462858	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6462859	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6462861	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7794371	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7806860	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7811599	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38742800-38745000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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