Variant report

Variant	rs2074656
Chromosome Location	chr7:38829007-38829008
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10232480	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12532461	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs12538785	0.84[ASN][1000 genomes]
rs13228699	0.91[YRI][hapmap]
rs1473137	0.95[CHB][hapmap]
rs1859937	0.93[EUR][1000 genomes]
rs2240350	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2240355	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2286081	0.85[CEU][hapmap];0.91[CHB][hapmap];0.96[JPT][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2286083	0.86[ASN][1000 genomes]
rs2286085	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2286090	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2286092	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2286095	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2286097	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2286099	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2286100	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2286102	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3779126	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3801135	0.85[CEU][hapmap];0.86[CHB][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3801142	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3801144	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4430003	0.86[CHB][hapmap]
rs4720298	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4720299	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4723783	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4723793	0.85[CEU][hapmap];0.91[CHB][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6462862	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6961672	0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7785161	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs7788664	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38757200-38835400	Weak transcription	Psoas Muscle	Psoas
2	chr7:38784800-38835000	Weak transcription	NHEK	skin
3	chr7:38785600-38834600	Weak transcription	HMEC	breast
4	chr7:38785600-38835000	Weak transcription	NH-A	brain
5	chr7:38793400-38861200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:38793600-38832600	Weak transcription	Brain Angular Gyrus	brain
7	chr7:38800200-38837600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:38803200-38845400	Weak transcription	Colonic Mucosa	Colon
9	chr7:38803200-38846000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr7:38804400-38836200	Weak transcription	Fetal Brain Male	brain
11	chr7:38806800-38832800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:38812600-38831400	Weak transcription	A549	lung
13	chr7:38812800-38834800	Weak transcription	HSMMtube	muscle
14	chr7:38813800-38830600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr7:38813800-38834200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr7:38813800-38836400	Weak transcription	HUVEC	blood vessel
17	chr7:38813800-38839600	Weak transcription	Right Ventricle	heart
18	chr7:38813800-38857400	Weak transcription	HSMM	muscle
19	chr7:38818400-38833000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr7:38820000-38836600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr7:38822200-38837400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:38822400-38836400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:38822400-38855200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:38823600-38835400	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr7:38824800-38829200	Strong transcription	Primary hematopoietic stem cells	blood
26	chr7:38824800-38836400	Strong transcription	Primary B cells from cord blood	blood
27	chr7:38825000-38837800	Weak transcription	Fetal Heart	heart
28	chr7:38825200-38836400	Strong transcription	Primary B cells from peripheral blood	blood
29	chr7:38825400-38832000	Strong transcription	Liver	Liver
30	chr7:38825600-38829200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr7:38825600-38834600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr7:38825600-38835800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:38825600-38835800	Strong transcription	GM12878-XiMat	blood
34	chr7:38825800-38829400	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr7:38825800-38835600	Strong transcription	Adipose Nuclei	Adipose
36	chr7:38825800-38836000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr7:38826200-38836400	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr7:38826400-38834400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:38826600-38829400	Strong transcription	Left Ventricle	heart
40	chr7:38826600-38829800	Strong transcription	Primary T cells from cord blood	blood
41	chr7:38826800-38832000	Strong transcription	Duodenum Mucosa	Duodenum
42	chr7:38826800-38833000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr7:38827000-38829400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr7:38827000-38836200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr7:38827200-38829200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr7:38827200-38836400	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr7:38827400-38829200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
48	chr7:38827400-38829400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr7:38827400-38829400	Strong transcription	Placenta	Placenta
50	chr7:38827400-38829400	Strong transcription	Osteobl	bone

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